View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14857_low_22 (Length: 204)
Name: NF14857_low_22
Description: NF14857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14857_low_22 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 3199229 - 3199027
Alignment:
| Q |
1 |
tgtataaaatgcaaattttccaagagaaattgaataatgaggcactcattttttgggatcatctttcttctcctcctcatccttcctaaaaagtttatga |
100 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
3199229 |
tgtataaaatgcaaattttcca-gagaaattgaataatgaggcactcattttttgggatcatctttcttctcctcctcatccttcctaaaaagtttgtga |
3199131 |
T |
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| Q |
101 |
tgaatatgctgagcaaaagtgcgaggtggaaaccttgctggttctttttcagttacaagttcaggaagtggcttcagaataattttctccttaggtggtt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3199130 |
tgaatatgctgagcaaaagtgcgaggtggaaaccttgctggttctttttcagttacaagttcaggaagtggcttcagaataattttctccttaggtggtt |
3199031 |
T |
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| Q |
201 |
caca |
204 |
Q |
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|||| |
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| T |
3199030 |
caca |
3199027 |
T |
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