View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14857_low_3 (Length: 473)
Name: NF14857_low_3
Description: NF14857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14857_low_3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 18 - 446
Target Start/End: Original strand, 8552194 - 8552629
Alignment:
| Q |
18 |
actccgcattacaagctagctttacttgactacactattttaaaaagagtagtgttatatatagcgaccaatttaactcgnnnnnnn-----gagtagtg |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||| |
|
|
| T |
8552194 |
actccgcattacaagctagctttacttgactacactattttaaaaagagtagtgttatatatagcgaccaacttgactcgaaacgaaaaaaagagtagtg |
8552293 |
T |
|
| Q |
113 |
ttatatgtagcgaccaacttgactcgcaaacaccaccatgaacttgtacaagactgagttgtagaaaaattgtgnnnnnnntattagcatgcgtttcatg |
212 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
8552294 |
ttatatgtagcgatcaacttgactcgcaaacaccaccatgaacttgtacaagactgagttgtagaaaaattgtgaaaaaaatattagcatgcgtttcatg |
8552393 |
T |
|
| Q |
213 |
aaacac--actcaaatagccgataaaactagttcgttatgtaatttgtgacggtgtgcttgctatatcaagcaattttcttttaaaaattgtaccaaaac |
310 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8552394 |
aaacacacactcaaatagccgataaaactagttcgttatgtaatttgtgacggtgtgcttgctatatcaagcaattttcttttaaaaattgtaccaaaac |
8552493 |
T |
|
| Q |
311 |
aaacaatttattcggttgaaccttgaattggcatttactatggttcggttattttggtgatttgtttggactttcgtcgcaatttaaagggtttaaaaca |
410 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
8552494 |
aaacaattcattcggttgaaccttgaattggcatttactatggttcggttattttggtgatttgattggactttcgtcgcaatttaaagggtttaaaacg |
8552593 |
T |
|
| Q |
411 |
attaaatcatgactcaaatgttttgtcgattaaatg |
446 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
8552594 |
attaaatcatgactcaaatgttttgtcgattaaatg |
8552629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University