View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14857_low_6 (Length: 406)
Name: NF14857_low_6
Description: NF14857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14857_low_6 |
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| [»] scaffold0578 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 2 - 392
Target Start/End: Complemental strand, 4955619 - 4955228
Alignment:
| Q |
2 |
aattttagctaatggtggatatttttctatgttttt-attttggtgcattattccgtacctgtacattacttttgcttcttacaggaagtagggagaaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4955619 |
aattttagctaatggtggatatttttctatgttttttattttggtgcattattccgtacctgtacattacttttgcttcttacaggaagtagggagaaaa |
4955520 |
T |
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| Q |
101 |
taccnnnnnnntttagtgctaattcattaagtactacaaatgtctttggttttggtactatatgttaatttgagaaatttgagattgatggatgattttc |
200 |
Q |
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|||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4955519 |
taccaaaaaaatttagtgctaattcatgaagtactacaaatgtctttggttttggtactatatgttaatttgagaaatttgagattgatggatgattttc |
4955420 |
T |
|
| Q |
201 |
ttttaaaggctatagaaaccacaaaggtctgtttttgtgtatgatcagtttagtagatgattcatgtatccccacttcaaatttctagctgatggtaggt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4955419 |
ttttaaaggctatagaaaccacaaaggtctgtttttgtgtatgatcagtttagtaggtgattcatgtatccccacttcaaatttctagctgatggtaggt |
4955320 |
T |
|
| Q |
301 |
aaatacattcattatgattcaagagtacccccagagtatatatcttgggggaggaaaccgttctaataggcatgaatatctaggcaagtttt |
392 |
Q |
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| T |
4955319 |
aaatacattcattatgattcaagagtacccccagagtatatatcttgggggaggaaaccgttctaatagacatgaatatctaggcaagtttt |
4955228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0578 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: scaffold0578
Description:
Target: scaffold0578; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 2 - 392
Target Start/End: Complemental strand, 1611 - 1219
Alignment:
| Q |
2 |
aattttagctaatggtggatatttttctatg--tttttattttggtgcattattccgtacctgtacattacttttgcttcttacaggaagtagggagaaa |
99 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1611 |
aattttagctaatggtggatatttttctattgttttttattttggtgcattattccgtacctgtacattacttttgcttcttacaggaagtagggagaaa |
1512 |
T |
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| Q |
100 |
ataccnnnnnnntttagtgctaattcattaagtactacaaatgtctttggttttggtactatatgttaatttgagaaatttgagattgatggatgatttt |
199 |
Q |
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||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1511 |
ataccaaaaaaatttagtgctaattcatgaagtactacaaatgtctttggttttggtactatatgttaatttgagaaatttgagattgatggatgatttt |
1412 |
T |
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| Q |
200 |
cttttaaaggctatagaaaccacaaaggtctgtttttgtgtatgatcagtttagtagatgattcatgtatccccacttcaaatttctagctgatggtagg |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
1411 |
cttttaaaggctatagaaaccacaaaggtctgtttttgtgtatgatcagtttagtaggtgattcatgtatccccacttcaaatttctagctgatggtagg |
1312 |
T |
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| Q |
300 |
taaatacattcattatgattcaagagtacccccagagtatatatcttgggggaggaaaccgttctaataggcatgaatatctaggcaagtttt |
392 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
1311 |
taaatacattcattatgattcaagagtacccccagagtatatatcttgggggaggaaaccgttctaatagacatgaatatctaggcaagtttt |
1219 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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