View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14857_low_9 (Length: 360)
Name: NF14857_low_9
Description: NF14857
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14857_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 17 - 263
Target Start/End: Original strand, 22076185 - 22076431
Alignment:
| Q |
17 |
atactaaggattaagattttataaaggctttgatagaatgacatgttggtgaaaggttttgttataaacctataattgtgatctgtaaccttataaaata |
116 |
Q |
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| T |
22076185 |
atactaaggattaagattttataaaggctttgatagaatgacatgttggtgaaaggttttgttataaacctataattgtgatttgtaaccttataaaata |
22076284 |
T |
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| Q |
117 |
aggtgttacataattgaagatagatacaggagtttgattcctgaatgttgtgaagttctcatggtgacatatctgacaatgatattatggtggggcatca |
216 |
Q |
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| T |
22076285 |
aggtgttacatcattgaagatagatacaggagtttgattcctgaatgttgtgaagttctcatggtgacatatctgacaatgatattatggtggggcatca |
22076384 |
T |
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| Q |
217 |
atgataaagtgagagcttagttgtatgtaaccaaattagttgaatgt |
263 |
Q |
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| T |
22076385 |
atgataaagtgagagcttagttgtatgtaaccaaattagttggatgt |
22076431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 98
Target Start/End: Complemental strand, 22059034 - 22058949
Alignment:
| Q |
13 |
gataatactaaggattaagattttataaaggctttgatagaatgacatgttggtgaaaggttttgttataaacctataattgtgat |
98 |
Q |
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||||||||||||||||| | ||||||| |||||| || | ||||||| | ||||||||| |||||||| ||| |||||||||| |
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| T |
22059034 |
gataatactaaggattaggcttttatagaggcttggagaatatgacatttaggtgaaaggctttgttatggacccttaattgtgat |
22058949 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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