View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14858_high_10 (Length: 321)

Name: NF14858_high_10
Description: NF14858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14858_high_10
NF14858_high_10
[»] chr6 (24 HSPs)
chr6 (16-176)||(29845973-29846133)
chr6 (16-176)||(29843496-29843656)
chr6 (16-140)||(29826485-29826609)
chr6 (177-252)||(29845872-29845947)
chr6 (177-252)||(29843395-29843470)
chr6 (177-252)||(29826685-29826760)
chr6 (248-321)||(29842541-29842615)
chr6 (252-319)||(29827549-29827617)
chr6 (247-319)||(28150730-28150803)
chr6 (252-317)||(28097005-28097071)
chr6 (252-317)||(2186377-2186443)
chr6 (252-316)||(26850284-26850349)
chr6 (252-315)||(27697147-27697211)
chr6 (252-314)||(28141098-28141161)
chr6 (60-118)||(28243341-28243399)
chr6 (60-109)||(28150445-28150494)
chr6 (252-315)||(26624822-26624886)
chr6 (252-315)||(26730799-26730863)
chr6 (252-315)||(27609678-27609742)
chr6 (252-315)||(27717057-27717121)
chr6 (65-141)||(28181668-28181744)
chr6 (60-124)||(28326024-28326088)
chr6 (252-315)||(28787813-28787877)
chr6 (252-315)||(28793934-28793998)
[»] scaffold0237 (2 HSPs)
scaffold0237 (19-176)||(2178-2335)
scaffold0237 (177-252)||(2077-2152)
[»] chr5 (1 HSPs)
chr5 (209-252)||(17790839-17790882)
[»] scaffold0038 (2 HSPs)
scaffold0038 (60-118)||(43503-43561)
scaffold0038 (60-124)||(117339-117403)
[»] chr1 (2 HSPs)
chr1 (252-317)||(26137442-26137508)
chr1 (270-319)||(5922029-5922078)
[»] scaffold0349 (1 HSPs)
scaffold0349 (252-315)||(2097-2161)
[»] chr2 (2 HSPs)
chr2 (254-293)||(3281218-3281258)
chr2 (252-315)||(17991758-17991822)


Alignment Details
Target: chr6 (Bit Score: 157; Significance: 2e-83; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 16 - 176
Target Start/End: Complemental strand, 29846133 - 29845973
Alignment:
Q  16 ataaaaatataattatcaagacatagatacgattattaaacatctactaaaacttatctcatcgggcaggaatgaatatgaatacgagtttattgtgaag 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29846133 ataaaaatataattatcaagacatagatacgattattaaacatctactaaaacttatctcatcgggcaggaatgaatatgaatacgagtttattgtgaag 29846034  T
Q  116 ataatcaaagaagtttccaaaaagatttacagttgcggattaccctgttggaaccgaatat 176  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  29846033 ataatcaaagaagtttccaaaaagatttaccgttgcggattaccctgttggaaccgaatat 29845973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 16 - 176
Target Start/End: Complemental strand, 29843656 - 29843496
Alignment:
Q  16 ataaaaatataattatcaagacatagatacgattattaaacatctactaaaacttatctcatcgggcaggaatgaatatgaatacgagtttattgtgaag 115  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||    
T  29843656 ataaaaatataattatcaatacatagatacgattattaaacatctactaaaacttatctcaacgggcaagaatgaatatgaatacgagtttattgtgaag 29843557  T
Q  116 ataatcaaagaagtttccaaaaagatttacagttgcggattaccctgttggaaccgaatat 176  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  29843556 ataatcaaagaagtttccaaaaagatttacaattgcggattaccctgttggaaccgaatat 29843496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 16 - 140
Target Start/End: Original strand, 29826485 - 29826609
Alignment:
Q  16 ataaaaatataattatcaagacatagatacgattattaaacatctactaaaacttatctcatcgggcaggaatgaatatgaatacgagtttattgtgaag 115  Q
    ||||||||||||||||||| ||||| |||| ||||||||||||||| | ||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  29826485 ataaaaatataattatcaatacataaatacaattattaaacatctagtcaaacttatctcatcgagcaggaatgaatatgaatacgagtttattgtgaag 29826584  T
Q  116 ataatcaaagaagtttccaaaaaga 140  Q
    ||| |||||||||||||||| ||||    
T  29826585 atagtcaaagaagtttccaacaaga 29826609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 177 - 252
Target Start/End: Complemental strand, 29845947 - 29845872
Alignment:
Q  177 ttttagatgcaaaatttcatgatcgagtccagatggtggggatttatggaattggtggattgggtaaaacaacact 252  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29845947 ttttagatgcaaaatttgatgatcgagtccagatggtggggatttatggaattggtggattgggtaaaacaacact 29845872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 177 - 252
Target Start/End: Complemental strand, 29843470 - 29843395
Alignment:
Q  177 ttttagatgcaaaatttcatgatcgagtccagatggtggggatttatggaattggtggattgggtaaaacaacact 252  Q
    |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29843470 tttttgatgcaaaatttgatgatcgagtccagatggtggggatttatggaattggtggattgggtaaaacaacact 29843395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 177 - 252
Target Start/End: Original strand, 29826685 - 29826760
Alignment:
Q  177 ttttagatgcaaaatttcatgatcgagtccagatggtggggatttatggaattggtggattgggtaaaacaacact 252  Q
    |||||||| |||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  29826685 ttttagatacaaaatttgacgatcgagtccagatggtggggatttatggaattggcggattgggtaaaacaacact 29826760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 248 - 321
Target Start/End: Complemental strand, 29842615 - 29842541
Alignment:
Q  248 acactacatgacttgatagaag-catgggtaaagaaattgtacgacaagaagcaacgaaagagcctggaaagcat 321  Q
    |||||||||||||||||||||| ||||||||||||||||||||||| |||| |||||||||||||||||||||||    
T  29842615 acactacatgacttgatagaagacatgggtaaagaaattgtacgaccagaatcaacgaaagagcctggaaagcat 29842541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 252 - 319
Target Start/End: Original strand, 29827549 - 29827617
Alignment:
Q  252 tacatgacttgatagaag-catgggtaaagaaattgtacgacaagaagcaacgaaagagcctggaaagc 319  Q
    |||||||||||||||||| |||||||||||||||||||||||||||| || ||||||||||||||||||    
T  29827549 tacatgacttgatagaagacatgggtaaagaaattgtacgacaagaatcaccgaaagagcctggaaagc 29827617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 247 - 319
Target Start/End: Original strand, 28150730 - 28150803
Alignment:
Q  247 aacactacatgacttgatagaag-catgggtaaagaaattgtacgacaagaagcaacgaaagagcctggaaagc 319  Q
    |||| |||||||||||||||||| |||||||||||||||||||||||||||| || | ||||||||||| ||||    
T  28150730 aacattacatgacttgatagaagacatgggtaaagaaattgtacgacaagaatcaccaaaagagcctgggaagc 28150803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 252 - 317
Target Start/End: Complemental strand, 28097071 - 28097005
Alignment:
Q  252 tacatgacttgatagaag-catgggtaaagaaattgtacgacaagaagcaacgaaagagcctggaaa 317  Q
    |||||||||||||||||| ||||||||||||||||||| |||||||| || | ||||| ||||||||    
T  28097071 tacatgacttgatagaagacatgggtaaagaaattgtaagacaagaatcaccaaaagaacctggaaa 28097005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 252 - 317
Target Start/End: Original strand, 2186377 - 2186443
Alignment:
Q  252 tacatgacttgatagaagca-tgggtaaagaaattgtacgacaagaagcaacgaaagagcctggaaa 317  Q
    |||||||||||||||| | | ||||||||||||| |||||||||||| || | ||||||||||||||    
T  2186377 tacatgacttgatagaggaaatgggtaaagaaatcgtacgacaagaatcaccaaaagagcctggaaa 2186443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 252 - 316
Target Start/End: Original strand, 26850284 - 26850349
Alignment:
Q  252 tacatgacttgatagaag-catgggtaaagaaattgtacgacaagaagcaacgaaagagcctggaa 316  Q
    |||||||||||||||| | ||||||||||||||| || ||||||||| |||  |||||||||||||    
T  26850284 tacatgacttgatagaggacatgggtaaagaaatcgtccgacaagaatcaattaaagagcctggaa 26850349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 252 - 315
Target Start/End: Complemental strand, 27697211 - 27697147
Alignment:
Q  252 tacatgacttgatagaag-catgggtaaagaaattgtacgacaagaagcaacgaaagagcctgga 315  Q
    |||||||||||||||| | ||||||||||||| | || ||||||||| |||| ||||||||||||    
T  27697211 tacatgacttgatagaggacatgggtaaagaagtcgtccgacaagaatcaactaaagagcctgga 27697147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 252 - 314
Target Start/End: Original strand, 28141098 - 28141161
Alignment:
Q  252 tacatgacttgatagaagc-atgggtaaagaaattgtacgacaagaagcaacgaaagagcctgg 314  Q
    |||||||||||||||| |  ||||||||||||||||| ||||||||| || | |||||||||||    
T  28141098 tacatgacttgatagaggagatgggtaaagaaattgttcgacaagaatcaccaaaagagcctgg 28141161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 118
Target Start/End: Original strand, 28243341 - 28243399
Alignment:
Q  60 tactaaaacttatctcatcgggcaggaatgaatatgaatacgagtttattgtgaagata 118  Q
    |||| |||||||| | || ||| ||||||| |||||||||||||||||||| |||||||    
T  28243341 tactcaaacttatttgattgggtaggaatggatatgaatacgagtttattgagaagata 28243399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 109
Target Start/End: Original strand, 28150445 - 28150494
Alignment:
Q  60 tactaaaacttatctcatcgggcaggaatgaatatgaatacgagtttatt 109  Q
    |||| |||||||||| || ||||||||||| |||||||| ||||||||||    
T  28150445 tactcaaacttatcttattgggcaggaatggatatgaattcgagtttatt 28150494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 252 - 315
Target Start/End: Original strand, 26624822 - 26624886
Alignment:
Q  252 tacatgacttgatagaag-catgggtaaagaaattgtacgacaagaagcaacgaaagagcctgga 315  Q
    |||||||||||||||| | ||||||||||| ||| || ||||||||| || | ||||||||||||    
T  26624822 tacatgacttgatagaggacatgggtaaagcaatcgtccgacaagaatcacctaaagagcctgga 26624886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 252 - 315
Target Start/End: Original strand, 26730799 - 26730863
Alignment:
Q  252 tacatgacttgatagaag-catgggtaaagaaattgtacgacaagaagcaacgaaagagcctgga 315  Q
    |||||||||||||||| | ||||||||||| ||| || ||||||||| || | ||||||||||||    
T  26730799 tacatgacttgatagaggacatgggtaaagcaatcgtccgacaagaatcacctaaagagcctgga 26730863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 252 - 315
Target Start/End: Complemental strand, 27609742 - 27609678
Alignment:
Q  252 tacatgacttgatagaag-catgggtaaagaaattgtacgacaagaagcaacgaaagagcctgga 315  Q
    |||||||||||||||| | ||||||||||||| | || ||||||||| |||  ||||||||||||    
T  27609742 tacatgacttgatagaggacatgggtaaagaagtcgtccgacaagaatcaattaaagagcctgga 27609678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 252 - 315
Target Start/End: Complemental strand, 27717121 - 27717057
Alignment:
Q  252 tacatgacttgatagaag-catgggtaaagaaattgtacgacaagaagcaacgaaagagcctgga 315  Q
    |||||||||||||||| | ||||||||||||| | || ||||||||| |||  ||||||||||||    
T  27717121 tacatgacttgatagaggacatgggtaaagaagtcgtccgacaagaatcaattaaagagcctgga 27717057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 141
Target Start/End: Original strand, 28181668 - 28181744
Alignment:
Q  65 aaacttatctcatcgggcaggaatgaatatgaatacgagtttattgtgaagataatcaaagaagtttccaaaaagat 141  Q
    |||||||| | || ||| ||||||| ||||||||| |||||||| |  |||||| ||||| | ||||||||||||||    
T  28181668 aaacttatttgattgggtaggaatggatatgaatatgagtttatcgaaaagatagtcaaatacgtttccaaaaagat 28181744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 124
Target Start/End: Original strand, 28326024 - 28326088
Alignment:
Q  60 tactaaaacttatctcatcgggcaggaatgaatatgaatacgagtttattgtgaagataatcaaa 124  Q
    |||| |||||||| | || ||| |||||||  ||||||||||||||||||| ||||||| |||||    
T  28326024 tactcaaacttatttgattgggtaggaatggctatgaatacgagtttattgagaagatagtcaaa 28326088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 252 - 315
Target Start/End: Original strand, 28787813 - 28787877
Alignment:
Q  252 tacatgacttgatagaag-catgggtaaagaaattgtacgacaagaagcaacgaaagagcctgga 315  Q
    |||||||||||||||||| ||||||||||||| | || ||||||||| |  | ||||||||||||    
T  28787813 tacatgacttgatagaagacatgggtaaagaagtcgtccgacaagaatcgcctaaagagcctgga 28787877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 252 - 315
Target Start/End: Original strand, 28793934 - 28793998
Alignment:
Q  252 tacatgacttgatagaag-catgggtaaagaaattgtacgacaagaagcaacgaaagagcctgga 315  Q
    |||||||||||||||||| ||||||||||||| | || ||||||||| |  | ||||||||||||    
T  28793934 tacatgacttgatagaagacatgggtaaagaagtcgtccgacaagaatcgcctaaagagcctgga 28793998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0237 (Bit Score: 142; Significance: 2e-74; HSPs: 2)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 19 - 176
Target Start/End: Complemental strand, 2335 - 2178
Alignment:
Q  19 aaaatataattatcaagacatagatacgattattaaacatctactaaaacttatctcatcgggcaggaatgaatatgaatacgagtttattgtgaagata 118  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||    
T  2335 aaaatataattatcaatacatagatacgattattaaacatctactaaaacttatctcaacgggcaagaatgaatatgaatacgagtttattgtgaagata 2236  T
Q  119 atcaaagaagtttccaaaaagatttacagttgcggattaccctgttggaaccgaatat 176  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  2235 atcaaagaagtttccaaaaagatttaccgttgcggattaccctgttggaaccgaatat 2178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0237; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 177 - 252
Target Start/End: Complemental strand, 2152 - 2077
Alignment:
Q  177 ttttagatgcaaaatttcatgatcgagtccagatggtggggatttatggaattggtggattgggtaaaacaacact 252  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2152 ttttagatgcaaaatttgatgatcgagtccagatggtggggatttatggaattggtggattgggtaaaacaacact 2077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 209 - 252
Target Start/End: Original strand, 17790839 - 17790882
Alignment:
Q  209 atggtggggatttatggaattggtggattgggtaaaacaacact 252  Q
    |||||||||||||||||||| ||||| || ||||||||||||||    
T  17790839 atggtggggatttatggaatgggtgggttaggtaaaacaacact 17790882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 118
Target Start/End: Original strand, 43503 - 43561
Alignment:
Q  60 tactaaaacttatctcatcgggcaggaatgaatatgaatacgagtttattgtgaagata 118  Q
    |||| |||||||| | || ||| ||||||| |||||||||||||||||||| |||||||    
T  43503 tactcaaacttatttgattgggtaggaatggatatgaatacgagtttattgagaagata 43561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 124
Target Start/End: Original strand, 117339 - 117403
Alignment:
Q  60 tactaaaacttatctcatcgggcaggaatgaatatgaatacgagtttattgtgaagataatcaaa 124  Q
    |||| |||||||| | || ||| |||||||  ||||||||||||||||||| ||||||| |||||    
T  117339 tactcaaacttatttgattgggtaggaatggctatgaatacgagtttattgagaagatagtcaaa 117403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 252 - 317
Target Start/End: Original strand, 26137442 - 26137508
Alignment:
Q  252 tacatgacttgatagaagc-atgggtaaagaaattgtacgacaagaagcaacgaaagagcctggaaa 317  Q
    |||||||||||||||| |  ||||||||||||||||| ||||||||| || | ||||| ||||||||    
T  26137442 tacatgacttgatagaggatatgggtaaagaaattgtccgacaagaatcacccaaagaacctggaaa 26137508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 319
Target Start/End: Complemental strand, 5922078 - 5922029
Alignment:
Q  270 catgggtaaagaaattgtacgacaagaagcaacgaaagagcctggaaagc 319  Q
    |||||| |||||||||||  |||||||| || ||||||||||||||||||    
T  5922078 catgggaaaagaaattgttagacaagaatcaccgaaagagcctggaaagc 5922029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 252 - 315
Target Start/End: Complemental strand, 2161 - 2097
Alignment:
Q  252 tacatgacttgatagaag-catgggtaaagaaattgtacgacaagaagcaacgaaagagcctgga 315  Q
    |||||||||||||||| | ||||||||||||| | || ||||||||| |||  ||||||||||||    
T  2161 tacatgacttgatagaggacatgggtaaagaagtcgtccgacaagaatcaattaaagagcctgga 2097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 254 - 293
Target Start/End: Original strand, 3281218 - 3281258
Alignment:
Q  254 catgacttgatagaag-catgggtaaagaaattgtacgaca 293  Q
    |||||||||||||||| ||||||||||||||||||| ||||    
T  3281218 catgacttgatagaagacatgggtaaagaaattgtaagaca 3281258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 252 - 315
Target Start/End: Complemental strand, 17991822 - 17991758
Alignment:
Q  252 tacatgacttgatagaag-catgggtaaagaaattgtacgacaagaagcaacgaaagagcctgga 315  Q
    |||||||||||||||| | ||||||||||||||| || || |||||| || | ||||||||||||    
T  17991822 tacatgacttgatagaggacatgggtaaagaaatcgttcggcaagaatcacctaaagagcctgga 17991758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University