View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14858_high_2 (Length: 511)
Name: NF14858_high_2
Description: NF14858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14858_high_2 |
 | |
|
| [»] chr6 (1 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 436; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 1 - 511
Target Start/End: Complemental strand, 33222211 - 33221699
Alignment:
| Q |
1 |
cttgatgtaagtgaaacttggtttaagtttattttctctagttatgttgagcctcataattaagaacctgggaaatcaaatgatcttgtgatgaatatga |
100 |
Q |
| |
|
||||||||||||||| |||||||| |||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
33222211 |
cttgatgtaagtgaaccttggttttagtttattttctctagttatgttgcgcctaataattaagaacctgggaaatcaaatgatcttgtaatgaatatga |
33222112 |
T |
|
| Q |
101 |
atctaaataagttgtagcaaacatgtgagtgctttcttactatatagttaatgaatctactaccaattaagtatgtttgctgcatcttttatgtgtatta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33222111 |
atctaaataagttgtagcaaacatgtgagtgctttcttactatatagttaatgaatctactaccaattaagtatgtttgctgcatcttttatgtgtatta |
33222012 |
T |
|
| Q |
201 |
tatgtgtataaagccaagtacagattgtaagagattttcaatacattgactagtttatcaatcctttggcttgcaattaaagcaacttctaggggttcag |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33222011 |
tatgtgtataaagccaagtacagattgtaagagattttcaatacattgactagtttatcaatcctttggcttgcaattaaagcaacttctaggggttcag |
33221912 |
T |
|
| Q |
301 |
attctctccatttggataggaaaatgcactccgttctcttttaaattcacgtgacacatggccctaatagaaattgatgaaagaaaagtaaacgaatc-- |
398 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33221911 |
attctctccatttggataggaaaatgcactccgttctcttttaaattcacatgacacatggccctaatagaaattgatgaaagaaaagtaaacgaatcat |
33221812 |
T |
|
| Q |
399 |
atacaaaagataaaagaaaagtggtgtgtcgaaattacgtactagagatagatgccatctcctgtcnnnnnnnnnnnnnngaagaagacttagatgtcac |
498 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
33221811 |
atacaaaagataaaagaaaagtggtgtgtcgaaattacgtactagagatagatgccatctcctgtcaaaaaaggaaaaaagaagaagacttagatgtcac |
33221712 |
T |
|
| Q |
499 |
ggaatcaaataaa |
511 |
Q |
| |
|
||||||||||||| |
|
|
| T |
33221711 |
ggaatcaaataaa |
33221699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University