View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14858_high_3 (Length: 507)
Name: NF14858_high_3
Description: NF14858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14858_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 14 - 252
Target Start/End: Original strand, 3331668 - 3331906
Alignment:
| Q |
14 |
tcatcatcgaattccctagcttccaattccttccttcttgcaacatttgttcccaacaatgatagctttgcaataatatcatcatgatcaatacggagaa |
113 |
Q |
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| T |
3331668 |
tcatcatcgaattccctagcttccaattccttccttcttgcaacatttgttcccaacaatgatagctttgcaataatgtcatcatgatcaatacggagaa |
3331767 |
T |
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| Q |
114 |
cgcccggttggccagaaattatcagaaggcatctgaccgagaagattaggattaagattaggattagaattaggaggaggcatagcttgaaaaagtggag |
213 |
Q |
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| T |
3331768 |
cgcccggttggccagaaattatcagaaggcatctgaccgagaagattaggattaagattaggattagaattaggaggatgcatagcttgaaaaagtggag |
3331867 |
T |
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| Q |
214 |
cagttgaatctcctaaaagctgttgttgttgttgctgaa |
252 |
Q |
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| T |
3331868 |
cagttgaatctcctaaaagctgttgttgttgttgctgaa |
3331906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 287 - 491
Target Start/End: Original strand, 3331950 - 3332154
Alignment:
| Q |
287 |
ttgaagttgttgaatagaagaaccatcatcttcttccaaaggaagtctctcataagcagcgttactaaaagaagcagacataataacaacaggtccagaa |
386 |
Q |
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| T |
3331950 |
ttgaagttgttgaatagaagaaccatcatcatcttccaaaggaagtctctcataagcagcgttactaaaagaagcagacataataacaacaggtccagaa |
3332049 |
T |
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| Q |
387 |
gcaatcaaagcaccaacaacacttccaccaacaacctgcccttgtccgcccgctaaatatatggtcaaaccagaagcagcgggcggagcaggtggtggaa |
486 |
Q |
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| T |
3332050 |
gcaatcaaagcaccaacaacacttccaccaacaacctgcccttgtccgcccgctaaatatatggtcaaaccagaagcagcgggcggagcaggtggtggaa |
3332149 |
T |
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| Q |
487 |
gaaac |
491 |
Q |
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||||| |
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| T |
3332150 |
gaaac |
3332154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 372 - 445
Target Start/End: Complemental strand, 39960017 - 39959944
Alignment:
| Q |
372 |
acaacaggtccagaagcaatcaaagcaccaacaacacttccaccaacaacctgcccttgtccgcccgctaaata |
445 |
Q |
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| T |
39960017 |
acaacaggtcctgaagcaatcaaagcaccaactacagcacctccaacaacttgtccttgagcacccgctaaata |
39959944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 374 - 442
Target Start/End: Complemental strand, 16579014 - 16578946
Alignment:
| Q |
374 |
aacaggtccagaagcaatcaaagcaccaacaacacttccaccaacaacctgcccttgtccgcccgctaa |
442 |
Q |
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| T |
16579014 |
aacaggtccagcagcaatcaaaggtccaacaacacttccaccaacaacttgcccttgtccaccggctaa |
16578946 |
T |
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