View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14858_high_9 (Length: 348)
Name: NF14858_high_9
Description: NF14858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14858_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 47 - 332
Target Start/End: Complemental strand, 54505422 - 54505141
Alignment:
| Q |
47 |
cccacgaaaatgaaaattaaggaaaagtaagaccaaccgttgtagttcaagggcgaaattaatcattctaatcaaccacacaagaaactaactactacat |
146 |
Q |
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| T |
54505422 |
cccacgaaaatgaaaattaaggaaaagtaagaccaaccgttgtagttcaagggcgaaattaatcattctaatcaaccacacaagaaacta----ctacat |
54505327 |
T |
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| Q |
147 |
gaaaatgaaaattaaggaaacatgaaagcaaaatgaaaatgtgcttgactttgaccccacacacaatattgcataatatttatgcatgtagtcacaaagc |
246 |
Q |
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| T |
54505326 |
gaaaatgaaaattaaggaaacatgaaagcaaaatgaaaatgtgcttgactttgaccccacacacaatattgcataatatttatgcatgtagtcacaaagc |
54505227 |
T |
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| Q |
247 |
ttaattcaaaagacatcaatgcaaatacgtaaacataatctagaaaattaagaacatcatcatagcgattgaaacttccaagaatc |
332 |
Q |
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| T |
54505226 |
ttaattcaaaagacatcaatgcaaatacgtaaacataatctagaaaattaagaacatcatcatagcgattgaaacttccaagaatc |
54505141 |
T |
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