View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14858_low_1 (Length: 576)
Name: NF14858_low_1
Description: NF14858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14858_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 533; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 533; E-Value: 0
Query Start/End: Original strand, 20 - 560
Target Start/End: Complemental strand, 48792369 - 48791829
Alignment:
| Q |
20 |
attcgtcgtaaatcttttgtccttgctatcatcaatggacaaagccatgagatagtaattgatataaggttgaaaactattgactctgacaatgttcata |
119 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48792369 |
attcgtcgtaaatcttttgtccttgctatcatcaatggacaaagccatgagatagtaattgatataaggttgaaaactattgactctgacaatgttcata |
48792270 |
T |
|
| Q |
120 |
agggatatggtttccctatcttatccgttgaggaacaaggtgttgccatagagcttccactgaaatatcctgctttcattgcttcggtgaaaaagagagg |
219 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
48792269 |
agggatatggtttccctatcttatccgttgaggaacaaggtgttgccatagagcttccactgaaatatcctgctttcattgcttcagtgaaaaagagagg |
48792170 |
T |
|
| Q |
220 |
tttaaatctctctgaagtggtttgttctacattctccatgggatggtttggagaagaagagagtaaaaggactgtgagagttgactgttttatgaaagaa |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48792169 |
tttaaatctctctgaagtggtttgttctacattctccatgggatggtttggagaagaagagagtaaaaggactgtgagagttgactgttttatgaaagaa |
48792070 |
T |
|
| Q |
320 |
aacagtgttaatatatatgttaggcctattagtggattaaccattgttgttgatcttggactacagaaaattgttgaatatcatgacagagaaattgaaa |
419 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48792069 |
aacagtgttaatatatatgtgaggcctattagtggattaaccattgttgttgatcttggactacagaaaattgttgaatatcatgacagagaaattgaaa |
48791970 |
T |
|
| Q |
420 |
ctgtgcctacagctgaaaacactgaatatcaggtttcaaaacaaagcccaccatttggaccaaaccagcatagtcttaccagtcatcaacctcaaggtcc |
519 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48791969 |
ctgtgcctacagctgaaaacactgaatatcaggtttcaaaacaaagcccaccatttggaccaaaccagcatagtcttaccagtcatcaacctcaaggtcc |
48791870 |
T |
|
| Q |
520 |
tggcttccagatcaagggccatagtgttaggtacgtaatgt |
560 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48791869 |
tggcttccagatcaagggccatagtgttaggtacgtaatgt |
48791829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 20 - 560
Target Start/End: Complemental strand, 15827841 - 15827301
Alignment:
| Q |
20 |
attcgtcgtaaatcttttgtccttgctatcatcaatggacaaagccatgagatagtaattgatataaggttgaaaactattgactctgacaatgttcata |
119 |
Q |
| |
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|||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| | |
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| T |
15827841 |
attcatcgtaaatcctttgttattgctatcatcaatggacaaagccatgagatagtaattgatataaggttgaaaacaattgtctctgacaatgttcaca |
15827742 |
T |
|
| Q |
120 |
agggatatggtttccctatcttatccgttgaggaacaaggtgttgccatagagcttccactgaaatatcctgctttcattgcttcggtgaaaaagagagg |
219 |
Q |
| |
|
||||||||||||| ||||| ||||| |||||||||||||| ||| || | |||||||| ||||||||||| ||||||||||||| | ||||||||||| |
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| T |
15827741 |
agggatatggttttcctatgttatctcttgaggaacaaggtcttgtcacaaagcttccattgaaatatcctcctttcattgcttcactaaaaaagagagg |
15827642 |
T |
|
| Q |
220 |
tttaaatctctctgaagtggtttgttctacattctccatgggatggtttggagaagaagagagtaaaaggactgtgagagttgactgttttatgaaagaa |
319 |
Q |
| |
|
||| |||||||||||||| || ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
15827641 |
tttgaatctctctgaagtagtgtgtgctccattctccatgggatggtttggagaagaagagagtaaaaggactgtgagagttgattgttttatgaaagaa |
15827542 |
T |
|
| Q |
320 |
aacagtgttaatatatatgttaggcctattagtggattaaccattgttgttgatcttggactacagaaaattgttgaatatcatgacagagaaattgaaa |
419 |
Q |
| |
|
|||| ||||||| | | ||| |||||||||||||||||||| || |||| |||||||||||| ||||||||||||||||||||| |||||| ||||| |
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|
| T |
15827541 |
aacactgttaatttttttgtgaggcctattagtggattaacaatggttgctgatcttggactcatgaaaattgttgaatatcatgatagagaagttgaag |
15827442 |
T |
|
| Q |
420 |
ctgtgcctacagctgaaaacactgaatatcaggtttcaaaacaaagcccaccatttggaccaaaccagcatagtcttaccagtcatcaacctcaaggtcc |
519 |
Q |
| |
|
||||||||| ||||| |||||||||||| ||| |||||||||||| || |||||||||||||| |||||||||||| | |||||||||||||||||||| |
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|
| T |
15827441 |
ttgtgcctacggctgagaacactgaatataaggcttcaaaacaaagacctccatttggaccaaaacagcatagtcttgcaagtcatcaacctcaaggtcc |
15827342 |
T |
|
| Q |
520 |
tggcttccagatcaagggccatagtgttaggtacgtaatgt |
560 |
Q |
| |
|
||||||| |||||| ||||||||||||||||| ||||||| |
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| T |
15827341 |
tggcttcttgatcaatggccatagtgttaggtaagtaatgt |
15827301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 103 - 552
Target Start/End: Original strand, 48833107 - 48833556
Alignment:
| Q |
103 |
ctctgacaatgttcataagggatatggtttccctatcttatccgttgaggaacaaggtgttgccatagagcttccactgaaatatcctgctttcattgct |
202 |
Q |
| |
|
||||||||||||| | || || |||||||||||| |||| ||||| |||||| |||| ||||| |||||| |||||||||| |||| ||||| |
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|
| T |
48833107 |
ctctgacaatgtttacaaagggaatggtttccctacactatctgttgatgaacaatccattgcaatagaacttccaaagaaatatcctccttttattgcc |
48833206 |
T |
|
| Q |
203 |
tcggtgaaaaagagaggtttaaatctctctgaagtggtttgttctacattctccatgggatggtttggagaagaagagagtaaaaggactgtgagagttg |
302 |
Q |
| |
|
|| ||||||||||||||||| ||||||||||| | |||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| ||| |
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| T |
48833207 |
tcagtgaaaaagagaggtttgaatctctctgagattgtttgttctacattctccatgggatggtttggagaaaaagagagtagaaggactgtgaggattg |
48833306 |
T |
|
| Q |
303 |
actgttttatgaaagaaaacagtgttaatatatatgttaggcctattagtggattaaccattgttgttgatcttggactacagaaaattgttgaatatca |
402 |
Q |
| |
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|||| ||||||||||||| | ||| ||||| ||||| |||||||||||||||||||| ||||||||||||||||| | |||||||||||| ||||| |
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|
| T |
48833307 |
actgctttatgaaagaaagtactgtaaatatttatgtgaggcctattagtggattaacaattgttgttgatcttggtcgtatgaaaattgttgagtatca |
48833406 |
T |
|
| Q |
403 |
tgacagagaaattgaaactgtgcctacagctgaaaacactgaatatcaggtttcaaaacaaagcccaccatttggaccaaaccagcatagtcttaccagt |
502 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||||||||||||||| |||||||||||| | ||| |
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| T |
48833407 |
tgacagggaaattgaaactgtgcctacagctgagaacaatgaatatcaggtttcaaaacaaaacccaccatttggaccaaaacagcatagtcttgcaagt |
48833506 |
T |
|
| Q |
503 |
catcaacctcaaggtcctggcttccagatcaagggccatagtgttaggta |
552 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
48833507 |
catcaacctcaaggtcctggcttccagatcaatggccacagtgttaggta |
48833556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 25 - 552
Target Start/End: Complemental strand, 48817912 - 48817385
Alignment:
| Q |
25 |
tcgtaaatcttttgtccttgctatcatcaatggacaaagccatgagatagtaattgatataaggttgaaaactattgactctgacaatgttcataaggga |
124 |
Q |
| |
|
||||||| | ||| || |||||||||||||||| |||| |||||||||| |||| ||| |||||||||| | |||| || |||||||||| | || || |
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|
| T |
48817912 |
tcgtaaagcctttatcattgctatcatcaatggccaaaaccatgagatactaatagatttaaggttgaagagaattgtctatgacaatgtttacaaaggg |
48817813 |
T |
|
| Q |
125 |
tatggtttccctatcttatccgttgaggaacaaggtgttgccatagagcttccactgaaatatcctgctttcattgcttcggtgaaaaagagaggtttaa |
224 |
Q |
| |
|
|||||||||||| || ||||||| ||||||| |||| ||||| |||||| |||||||||| |||| ||||| || ||| ||||||||||||| | |
|
|
| T |
48817812 |
aatggtttccctacactaaccgttgatgaacaagccattgcaatagaacttccaaagaaatatcctccttttattgcctcagtgcaaaagagaggtttga |
48817713 |
T |
|
| Q |
225 |
atctctctgaagtggtttgttctacattctccatgggatggtttggagaagaagagagtaaaaggactgtgagagttgactgttttatgaaagaaaacag |
324 |
Q |
| |
|
|||||||||| ||||||||||||| ||| | |||||||||||||||||| |||||| || ||||||||||||||||||||||||||||||||||| | |
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|
| T |
48817712 |
atctctctgaggtggtttgttctagtttcactatgggatggtttggagaaaaagagaatagaaggactgtgagagttgactgttttatgaaagaaagtac |
48817613 |
T |
|
| Q |
325 |
tgttaatatatatgttaggcctattagtggattaaccattgttgttgatcttggactacagaaaattgttgaatatcatgacagagaaattgaaactgtg |
424 |
Q |
| |
|
|||||||||||||||||||||||||| |||| | ||||| || | ||||||| | ||| |||||||||||| || ||||| ||||| ||||| | ||| |
|
|
| T |
48817612 |
tgttaatatatatgttaggcctattactggaatcaccatggtggctgatcttagtctaatgaaaattgttgagtaccatgatagagatgttgaagcagtg |
48817513 |
T |
|
| Q |
425 |
cctacagctgaaaacactgaatatcaggtttcaaaacaaagcccaccatttggaccaaaccagcatagtcttaccagtcatcaacctcaaggtcctggct |
524 |
Q |
| |
|
||||| ||||| || ||||| || ||||||||||||||| ||||||||||||||||| |||||||||||| | ||| ||||||||||||||||||||| |
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|
| T |
48817512 |
cctactgctgagaatactgattacagggtttcaaaacaaagtccaccatttggaccaaaacagcatagtcttgctagttatcaacctcaaggtcctggct |
48817413 |
T |
|
| Q |
525 |
tccagatcaagggccatagtgttaggta |
552 |
Q |
| |
|
| |||||||| || || ||||||||||| |
|
|
| T |
48817412 |
ttcagatcaatggtcacagtgttaggta |
48817385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 60 - 269
Target Start/End: Original strand, 40844167 - 40844376
Alignment:
| Q |
60 |
aaagccatgagatagtaattgatataaggttgaaaactattgactctgacaatgttcataagggatatggtttccctatcttatccgttgaggaacaagg |
159 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| | |||| ||| |||||| |||| || || |||||||||| | | || ||||| |||||| |
|
|
| T |
40844167 |
aaagccatgagatagtaattgatttaaggttgaagagcattgtctccgacaatattcacaaagggaatggtttcccaacgctttcggttgatgaacaaac |
40844266 |
T |
|
| Q |
160 |
tgttgccatagagcttccactgaaatatcctgctttcattgcttcggtgaaaaagagaggtttaaatctctctgaagtggtttgttctacattctccatg |
259 |
Q |
| |
|
||||| ||| ||||||| | ||||||||| |||||||||| || ||||||||||||| || ||||||||||| || |||||||||| ||| | ||| |
|
|
| T |
40844267 |
cgttgcagtagggcttccattaaaatatcctcctttcattgcatcaatgaaaaagagaggattgaatctctctgaggtactttgttctactttcactatg |
40844366 |
T |
|
| Q |
260 |
ggatggtttg |
269 |
Q |
| |
|
|||||||||| |
|
|
| T |
40844367 |
ggatggtttg |
40844376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 265 - 446
Target Start/End: Original strand, 40845618 - 40845799
Alignment:
| Q |
265 |
gtttggagaagaagagagtaaaaggactgtgagagttgactgttttatgaaagaaaacagtgttaatatatatgttaggcctattagtggattaaccatt |
364 |
Q |
| |
|
|||||||||||| | |||| ||||||||||| | ||||| || ||||||||||||| || |||||||||||||||||||||| |||| | | ||| |
|
|
| T |
40845618 |
gtttggagaagagaaaagtagtaggactgtgaggttagactgcttaatgaaagaaaacactgccaatatatatgttaggcctattactggaattaaaatt |
40845717 |
T |
|
| Q |
365 |
gttgttgatcttggactacagaaaattgttgaatatcatgacagagaaattgaaactgtgcctacagctgaaaacactgaat |
446 |
Q |
| |
|
||||||||||||| ||| ||| |||||||| |||||||| |||| |||||| |||||||||| | ||| ||||| |||| |
|
|
| T |
40845718 |
gttgttgatcttgaacttatgaagattgttgagtatcatgatagagttattgaagctgtgcctacggatgagaacacagaat |
40845799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 25 - 92
Target Start/End: Original strand, 48832686 - 48832753
Alignment:
| Q |
25 |
tcgtaaatcttttgtccttgctatcatcaatggacaaagccatgagatagtaattgatataaggttga |
92 |
Q |
| |
|
||||||| | ||| || |||||||||||||||| ||||||||||||||| |||| ||| ||||||||| |
|
|
| T |
48832686 |
tcgtaaagcctttatcattgctatcatcaatggccaaagccatgagatactaatagatttaaggttga |
48832753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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