View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14858_low_12 (Length: 332)
Name: NF14858_low_12
Description: NF14858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14858_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 248; Significance: 1e-138; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 18 - 309
Target Start/End: Complemental strand, 35867600 - 35867308
Alignment:
| Q |
18 |
gtttcgatttcgtttttcaacttttgcannnnnnn-caatgttactaaaatgagaaccggaatcgttttttggttgaaggatggcggcaacgatgcacgc |
116 |
Q |
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| T |
35867600 |
gtttcgatttcgtttttcaacttttgcattttttttcaatgttactaaaatgagaaccggaatcgttttttggttgaaggatggcggcaacgatgcacgc |
35867501 |
T |
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| Q |
117 |
caagatcaacaggaaaaagttgaataaactcaatatcatcaaaatctggtaattaaaatcacttttactcataatcgattatttacatgcttatccttct |
216 |
Q |
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||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
35867500 |
caagatcaacaggaagaagttgaataagctcaatatcatcaaaatctggtaattaaaatcacttttactcataatcgattatttacatgcttattcttct |
35867401 |
T |
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| Q |
217 |
tcttcttcaactgaaatcgtttcttcacagtgaagagattctgaatccagcgattcccatggctctgagactttctggaatactcatgggtaa |
309 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35867400 |
tcttctttaactgaaatcgtttcttcacagtgaagagattctgaatccagcgattcccatggctctgagactttctggaatactcatgggtaa |
35867308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 53 - 168
Target Start/End: Complemental strand, 34817504 - 34817388
Alignment:
| Q |
53 |
caatgttactaaaatgagaaccggaatcg-ttttttggttgaaggatggcggcaacgatgcacgccaagatcaacaggaaaaagttgaataaactcaata |
151 |
Q |
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|||||||||||||||||| | |||||||| ||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||| |
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| T |
34817504 |
caatgttactaaaatgaggatcggaatcgattttttgtttgaaggatggcggcaacgatgcacgctaagatcaacaggaagaagttgaataagctcaata |
34817405 |
T |
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| Q |
152 |
tcatcaaaatctggtaa |
168 |
Q |
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||||||||||||||||| |
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| T |
34817404 |
tcatcaaaatctggtaa |
34817388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 237 - 309
Target Start/End: Complemental strand, 34817319 - 34817247
Alignment:
| Q |
237 |
ttcttcacagtgaagagattctgaatccagcgattcccatggctctgagactttctggaatactcatgggtaa |
309 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
34817319 |
ttcttcacagtgaagaaattctgaatccagcgattcccatggctcttagactttctggaatactcatgggtaa |
34817247 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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