View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14858_low_13 (Length: 322)
Name: NF14858_low_13
Description: NF14858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14858_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 15 - 301
Target Start/End: Complemental strand, 54565938 - 54565650
Alignment:
| Q |
15 |
cagagacacgacgaattactaacggaaaaacaaacagcgtgtattactcctacaacctggtacgaacgagaaaagagaatcatatgaaaagttaggagaa |
114 |
Q |
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| T |
54565938 |
cagagacacgacgaattactaacggaaaaacaaacagcgtgtattactcctacaacctggtacgaacgagaaaagagaatcatatgaaaagttaggagaa |
54565839 |
T |
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| Q |
115 |
tgaacgagaaacacctgagtagtgagtgagtgagtcaatgttagtcaaacacac--acactctcacacataaaccgtggaaattcaacaaacactaaact |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54565838 |
tgaacgagaaacacctgagtagtgagtgagtgagtcaatgttagtcaaacacacacacactctcacacataaaccgtggaaattcaacaaacactaaact |
54565739 |
T |
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| Q |
213 |
cgtttagctttttgcattaatcgattaacnnnnnnngttctctttctctagaagcttctctttctgcgtctaagtttccatggctgagc |
301 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54565738 |
cgtttagctttttgcattaatcgattaacaaaaaaagttctctttctctagaagcttctctttctgcgtctaagtttccatggctgagc |
54565650 |
T |
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