View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14858_low_15 (Length: 309)
Name: NF14858_low_15
Description: NF14858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14858_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 280; Significance: 1e-157; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 19 - 302
Target Start/End: Original strand, 8936018 - 8936301
Alignment:
| Q |
19 |
ataacggaaaaaggatatcggcgtaacaacctccacgtgacagtcatcatctttatagtctctaaccttcaaatccccggcaatggcataaacatggcca |
118 |
Q |
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| T |
8936018 |
ataacggaaaaaggatatcggcgtaacaacctccacgtgacagtcatcatctttatagtctctaaccttcaaatccccggcaatagcataaacatggcca |
8936117 |
T |
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| Q |
119 |
ccttgagaattcgacttgttcatgcaagcagctgcatccgcatacaccggatcatccctcacaggactgctacaattcatgtaaattacgtgctggaaca |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8936118 |
ccttgagaattcgacttgttcatgcaagcagctgcatccgcatacaccggatcatccctcacaggactgctacaattcatgtaaattacgtgctggaaca |
8936217 |
T |
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| Q |
219 |
tttgtaatgttgtaggatatttaagaatttccaaagtaagagcttctgcattttcatatatagtagtatcaactattcttctct |
302 |
Q |
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| T |
8936218 |
tttgtaatgttgtaggatatttaagaatttccaaagtaagagcttctgcattttcatatatagtagtatcaactattcttctct |
8936301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 19 - 227
Target Start/End: Original strand, 8959557 - 8959765
Alignment:
| Q |
19 |
ataacggaaaaaggatatcggcgtaacaacctccacgtgacagtcatcatctttatagtctctaaccttcaaatccccggcaatggcataaacatggcca |
118 |
Q |
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| T |
8959557 |
ataacggaaaaaagatattggcgtaacaacccccacgtgacagtcatcatttttatagtttctaaccttcaaatccccggcaatggcataaacatggcca |
8959656 |
T |
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| Q |
119 |
ccttgagaattcgacttgttcatgcaagcagctgcatccgcatacaccggatcatccctcacaggactgctacaattcatgtaaattacgtgctggaaca |
218 |
Q |
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| T |
8959657 |
cgttgagaattcgacttgttcacgcaagaagctgcatctgcatacaccggatcatccctcacaggactgctacaattcatgtaaattacgtgctggaaca |
8959756 |
T |
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| Q |
219 |
tttgtaatg |
227 |
Q |
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||||||||| |
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| T |
8959757 |
tttgtaatg |
8959765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 19 - 227
Target Start/End: Original strand, 8924395 - 8924603
Alignment:
| Q |
19 |
ataacggaaaaaggatatcggcgtaacaacctccacgtgacagtcatcatctttatagtctctaaccttcaaatccccggcaatggcataaacatggcca |
118 |
Q |
| |
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||||| |||||| ||||| |||||||||||| |||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
8924395 |
ataacagaaaaaagatattggcgtaacaacccccacgtgacagtcatcatttttatagtttctaaccttcaaatccccggcaatggcataaacatggcca |
8924494 |
T |
|
| Q |
119 |
ccttgagaattcgacttgttcatgcaagcagctgcatccgcatacaccggatcatccctcacaggactgctacaattcatgtaaattacgtgctggaaca |
218 |
Q |
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| |||||||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8924495 |
cgttgagaattcgacttgttcacgcaagaagctgcatctgcatacaccggatcatccctcacaggactgctacaattcatgtaaattacgtgctggaaca |
8924594 |
T |
|
| Q |
219 |
tttgtaatg |
227 |
Q |
| |
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||||||||| |
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| T |
8924595 |
tttgtaatg |
8924603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 82 - 229
Target Start/End: Original strand, 8945629 - 8945773
Alignment:
| Q |
82 |
aaccttcaaatccccggcaatggcataaacatggccaccttgagaattcgacttgttcatgcaagcagctgcatccgcatacaccggatcatccctcaca |
181 |
Q |
| |
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|||||||||||| || ||||||| |||||||||||||||||| ||||| |||||| ||||||| | |||||||| | ||| | ||||||||| | | |
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| T |
8945629 |
aaccttcaaatctccagcaatggtataaacatggccaccttgggaattggacttg---atgcaagaatctgcatccacgtacgctggatcatccagtata |
8945725 |
T |
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| Q |
182 |
ggactgctacaattcatgtaaattacgtgctggaacatttgtaatgtt |
229 |
Q |
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||| |||| ||||||||||||| |||||||||||| | | |||||||| |
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| T |
8945726 |
ggattgctgcaattcatgtaaactacgtgctggaatagtcgtaatgtt |
8945773 |
T |
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