View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14858_low_16 (Length: 303)
Name: NF14858_low_16
Description: NF14858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14858_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 181; Significance: 8e-98; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 46 - 287
Target Start/End: Complemental strand, 27313258 - 27313011
Alignment:
| Q |
46 |
ttacatatattttcttatttatgtaaaatcatatacatgaaca------actgagtactattacaagggataatcaaataacactctagacctagttaaa |
139 |
Q |
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| T |
27313258 |
ttacatatattttcttaattatgtaaaaacatatacatgaacatgaacaactgagtactattacaagggataatcaaataacactctagacctaattaaa |
27313159 |
T |
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| Q |
140 |
taacataagtttaacctaaccaatcatccattcnnnnnnnncacaatcaaagtttttattgaatggagtagaacaagtatttcaacatgtgacaatgatc |
239 |
Q |
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| T |
27313158 |
taacataagtttaacctaaccaatcatccattcttttttttcacaatcgaagtttttattgaatggagtagaacaagtatttcaacatgtgacaatcatc |
27313059 |
T |
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| Q |
240 |
cactcttgcaattaactacacaggaaacaaaagatcagaggatcgttc |
287 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27313058 |
cactcttgcaattaactacacaggaaacaaaagatcagaggatcgttc |
27313011 |
T |
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