View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14858_low_17 (Length: 294)
Name: NF14858_low_17
Description: NF14858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14858_low_17 |
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Alignment Details
Target: chr6 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 8 - 278
Target Start/End: Original strand, 810019 - 810289
Alignment:
| Q |
8 |
atgaaatgacactaacagtttaggaagtggaatattaattgaaacagtaataaagtcaccatcacgggaagaatgttacaaccctttcagctcaaaagag |
107 |
Q |
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| T |
810019 |
atgaaatgacactaacagtttaggaagtggaatattaattgaaacagtaataaagtcaccatcacgggaagaatgttacaaccctttcagctcaaaagag |
810118 |
T |
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| Q |
108 |
ttgaatcaaattcaagttagtagctcattaagatatgatgacatataaaaactgcaaaaatttgaagatacaccattcatttttgaggtttgtaaagaat |
207 |
Q |
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| T |
810119 |
ttgaatcaaattcaagttagtagctcattaagatatgatgacatataaaaactgcaaaaatttgaagatacaccattcatttttgaggtttgtaaagaat |
810218 |
T |
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| Q |
208 |
aagtcagaaaaataagtagcactaaagtgccacttgaaatgctttgtcggcgcaaaatgctacaatgattg |
278 |
Q |
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| T |
810219 |
aagtcagaaaaataagtagcactaaagtgccacttgaaatgctttgtcggcgcaaaatgctacaatgattg |
810289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 145 - 278
Target Start/End: Original strand, 33723079 - 33723215
Alignment:
| Q |
145 |
atgacatataaaaactgcaaaaatttgaagataca-ccattcatttttgaggtttgtaaagaata---agtcagaaaaataagtagcactaaagtgccac |
240 |
Q |
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| T |
33723079 |
atgacatataaaaactgcaaaattttgaagatacatccgttcattttt-agttttgtaaagaataataagtcagaaaaataactagcactaaagcgccac |
33723177 |
T |
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| Q |
241 |
ttgaaatgctttgtcggcgcaaaatgctacaatgattg |
278 |
Q |
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| T |
33723178 |
ttgaaatgctttgtcggcgcaaaatgctacaatgattg |
33723215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 16 - 130
Target Start/End: Original strand, 33722087 - 33722201
Alignment:
| Q |
16 |
acactaacagtttaggaagtggaatattaattgaaacagtaataaagtcaccatcacgggaagaatgttacaaccctttcagctcaaaagagttgaatca |
115 |
Q |
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|||||||||| ||| ||||||||||| |||||||||||||| ||||||||||||| | ||||||||||||||||||||||||| ||||||| | ||||| |
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| T |
33722087 |
acactaacagcttacaaagtggaatatcaattgaaacagtaacaaagtcaccatcatgagaagaatgttacaaccctttcagctaaaaagaggtaaatca |
33722186 |
T |
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| Q |
116 |
aattcaagttagtag |
130 |
Q |
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|||| |||||||||| |
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| T |
33722187 |
aatttaagttagtag |
33722201 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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