View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14858_low_18 (Length: 284)

Name: NF14858_low_18
Description: NF14858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14858_low_18
NF14858_low_18
[»] chr3 (14 HSPs)
chr3 (7-260)||(55082572-55082825)
chr3 (7-116)||(50913516-50913626)
chr3 (13-112)||(38035081-38035181)
chr3 (13-116)||(38038573-38038677)
chr3 (7-116)||(38041960-38042070)
chr3 (20-116)||(38027488-38027585)
chr3 (20-116)||(38032315-38032412)
chr3 (164-260)||(38035286-38035382)
chr3 (110-260)||(50913649-50913797)
chr3 (11-116)||(50906835-50906941)
chr3 (175-253)||(38032518-38032596)
chr3 (175-253)||(38038783-38038861)
chr3 (175-251)||(38027691-38027767)
chr3 (110-150)||(38035208-38035248)
[»] chr8 (2 HSPs)
chr8 (13-116)||(21608283-21608387)
chr8 (175-253)||(21608493-21608571)


Alignment Details
Target: chr3 (Bit Score: 246; Significance: 1e-136; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 7 - 260
Target Start/End: Complemental strand, 55082825 - 55082572
Alignment:
Q  7 atgaagaggttcctgattccagtatcatttttgaatgagcctttatttcaagaattgcttagccaagcagaagaggagtttggttactgtcatccatggg 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55082825 atgaagaggttcctgattccagtatcatttttgaatgagcctttatttcaagaattgcttagccaagcagaagaggagtttggttactgtcatccatggg 55082726  T
Q  107 tggtcttacatacaacttctcgcttgaacggtcaataattaattaattagtgataacatatagcacaataggattgactagctgagacaacattcgtaca 206  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  55082725 tggtcttacatacaacttctcgcttgaacggccaataattaattaattagtgataacatatagcacaataggattgactagttgagacaacattcgtaca 55082626  T
Q  207 tcaggaatttctttgtccattttgatctttcctcttaagtggaaatctgaaatg 260  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55082625 tcaggaatttctttgtccattttgatctttcctcttaagtggaaatctgaaatg 55082572  T

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Target: chr3; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 7 - 116
Target Start/End: Original strand, 50913516 - 50913626
Alignment:
Q  7 atgaagaggttcctgattccagtatcatttttgaatgagcctttatttcaagaattgcttagccaagcagaagaggagtttggttactgtcatcc-atgg 105  Q
    |||||||||||| |||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||| ||||    
T  50913516 atgaagaggttcttgattccaatatcattcttgaatgagcctttatttcaagaattgcttagccaagctgaagaggaatttggctactgtcatccaatgg 50913615  T
Q  106 gtggtcttaca 116  Q
    |||||||||||    
T  50913616 gtggtcttaca 50913626  T

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Target: chr3; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 13 - 112
Target Start/End: Original strand, 38035081 - 38035181
Alignment:
Q  13 aggttcctgattccagtatcatttttgaatgagcctttatttcaagaattgcttagccaagcagaagaggagtttggttactgtcatcc-atgggtggtc 111  Q
    |||||| |||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |||||||| || ||||| |||||||| ||||||||||    
T  38035081 aggttcatgattccaatatcattcttgaatgagcctttatttcaagaattgcttagccaagctgaagaggaattcggttattgtcatccaatgggtggtc 38035180  T
Q  112 t 112  Q
    |    
T  38035181 t 38035181  T

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Target: chr3; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 13 - 116
Target Start/End: Original strand, 38038573 - 38038677
Alignment:
Q  13 aggttcctgattccagtatcatttttgaatgagcctttatttcaagaattgcttagccaagcagaagaggagtttggttactgtcatcc-atgggtggtc 111  Q
    |||||| |||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |||||||| || ||||| |||||||| ||||| ||||    
T  38038573 aggttcatgattccaatatcattcttgaatgagcctttatttcaagaattgcttagccaagctgaagaggaattcggttattgtcatccaatgggaggtc 38038672  T
Q  112 ttaca 116  Q
    |||||    
T  38038673 ttaca 38038677  T

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Target: chr3; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 7 - 116
Target Start/End: Original strand, 38041960 - 38042070
Alignment:
Q  7 atgaagaggttcctgattccagtatcatttttgaatgagcctttatttcaagaattgcttagccaagcagaagaggagtttggttactgtcatc-catgg 105  Q
    |||||||||||| ||||||||||| |||| |||||||||||||| |||||||||||| | |||||||| |||||||| || |||||||||||||  ||||    
T  38041960 atgaagaggttcttgattccagtagcattcttgaatgagcctttgtttcaagaattgttgagccaagctgaagaggaattcggttactgtcatcaaatgg 38042059  T
Q  106 gtggtcttaca 116  Q
    |||||||||||    
T  38042060 gtggtcttaca 38042070  T

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Target: chr3; HSP #6
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 20 - 116
Target Start/End: Original strand, 38027488 - 38027585
Alignment:
Q  20 tgattccagtatcatttttgaatgagcctttatttcaagaattgcttagccaagcagaagaggagtttggttactgtcatcc-atgggtggtcttaca 116  Q
    ||||||| |||||||| |||||||||||||||||||||||||||||||||||| | |||||||| || ||||| |||||||| |||||||||||||||    
T  38027488 tgattcccgtatcattcttgaatgagcctttatttcaagaattgcttagccaatctgaagaggaattcggttattgtcatccaatgggtggtcttaca 38027585  T

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Target: chr3; HSP #7
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 20 - 116
Target Start/End: Original strand, 38032315 - 38032412
Alignment:
Q  20 tgattccagtatcatttttgaatgagcctttatttcaagaattgcttagccaagcagaagaggagtttggttactgtcatcc-atgggtggtcttaca 116  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||| | |||||||| || ||||| |||||||| ||||| |||||||||    
T  38032315 tgattccagtatcattcttgaatgagcctttatttcaagaattgcttagccaatctgaagaggaattcggttattgtcatccaatgggcggtcttaca 38032412  T

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Target: chr3; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 164 - 260
Target Start/End: Original strand, 38035286 - 38035382
Alignment:
Q  164 atatagcacaataggattgactagctgagacaacattcgtacatcaggaatttctttgtccattttgatctttcctcttaagtggaaatctgaaatg 260  Q
    |||||| |||||||||||||| |  ||||||||  || ||||||||| ||||| |||||| |||||||| ||||||||||||||||||||| |||||    
T  38035286 atataggacaataggattgaccaattgagacaatttttgtacatcagcaatttttttgtcaattttgatgtttcctcttaagtggaaatcttaaatg 38035382  T

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Target: chr3; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 110 - 260
Target Start/End: Original strand, 50913649 - 50913797
Alignment:
Q  110 tcttacatacaacttctcgcttgaacggtcaataattaattaattagtgataacatatagcacaataggattgactagctgagacaacattcgtacatca 209  Q
    ||||||||||| |||||| ||||||| | | |||||| ||  || ||||||||||||  | | | ||||| ||||||| ||||||||  || |||||||     
T  50913649 tcttacatacagcttctcacttgaacagactataattcatgtatgagtgataacata--ggatagtaggactgactagttgagacaagttttgtacatcg 50913746  T
Q  210 ggaatttctttgtccattttgatctttcctcttaagtggaaatctgaaatg 260  Q
    | |||||||||||| ||||||||  |||||||||||||||||||| |||||    
T  50913747 gaaatttctttgtcaattttgatgcttcctcttaagtggaaatcttaaatg 50913797  T

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Target: chr3; HSP #10
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 11 - 116
Target Start/End: Complemental strand, 50906941 - 50906835
Alignment:
Q  11 agaggttcctgattccagtatcatttttgaatgagcctttatttcaagaattgcttagccaagcagaagaggagtttggttactgtcatcc-atgggtgg 109  Q
    |||||||  |||||||||| ||||| ||||||||||||| ||||||||||||| |  | ||||| |||||||| ||  ||||||||||||| ||||||||    
T  50906941 agaggtttttgattccagtgtcattcttgaatgagccttcatttcaagaattgttgcgtcaagccgaagaggaattccgttactgtcatccaatgggtgg 50906842  T
Q  110 tcttaca 116  Q
    |||||||    
T  50906841 tcttaca 50906835  T

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Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 175 - 253
Target Start/End: Original strand, 38032518 - 38032596
Alignment:
Q  175 taggattgactagctgagacaacattcgtacatcaggaatttctttgtccattttgatctttcctcttaagtggaaatc 253  Q
    |||||||||| || ||||||||  || ||||||||| |||||||||||| |||||||| |||||||||| |||||||||    
T  38032518 taggattgaccagttgagacaatttttgtacatcagaaatttctttgtcaattttgatgtttcctcttaggtggaaatc 38032596  T

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Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 175 - 253
Target Start/End: Original strand, 38038783 - 38038861
Alignment:
Q  175 taggattgactagctgagacaacattcgtacatcaggaatttctttgtccattttgatctttcctcttaagtggaaatc 253  Q
    |||||||||| || ||||||||  || ||||||||| || ||||||||| |||||||| ||||||||||||| ||||||    
T  38038783 taggattgaccagttgagacaatttttgtacatcagcaacttctttgtcaattttgatgtttcctcttaagttgaaatc 38038861  T

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Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 175 - 251
Target Start/End: Original strand, 38027691 - 38027767
Alignment:
Q  175 taggattgactagctgagacaacattcgtacatcaggaatttctttgtccattttgatctttcctcttaagtggaaa 251  Q
    |||||||||| || ||||| ||  |||||||||||| ||||||||| || |||||||| |||||||||| |||||||    
T  38027691 taggattgaccagttgagataattttcgtacatcagcaatttctttatcaattttgatgtttcctcttatgtggaaa 38027767  T

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Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 110 - 150
Target Start/End: Original strand, 38035208 - 38035248
Alignment:
Q  110 tcttacatacaacttctcgcttgaacggtcaataattaatt 150  Q
    ||||||||||| |||||| ||||||||||| ||||||||||    
T  38035208 tcttacatacagcttctctcttgaacggtctataattaatt 38035248  T

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Target: chr8 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 13 - 116
Target Start/End: Original strand, 21608283 - 21608387
Alignment:
Q  13 aggttcctgattccagtatcatttttgaatgagcctttatttcaagaattgcttagccaagcagaagaggagtttggttactgtcatcc-atgggtggtc 111  Q
    |||||| |||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |||||||| || ||||| |||||||| ||||| ||||    
T  21608283 aggttcatgattccaatatcattcttgaatgagcctttatttcaagaattgcttagccaagctgaagaggaattcggttattgtcatccaatgggaggtc 21608382  T
Q  112 ttaca 116  Q
    |||||    
T  21608383 ttaca 21608387  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 175 - 253
Target Start/End: Original strand, 21608493 - 21608571
Alignment:
Q  175 taggattgactagctgagacaacattcgtacatcaggaatttctttgtccattttgatctttcctcttaagtggaaatc 253  Q
    |||||||||| || |||||||   || ||||||||| |||||||||||| |||||||| |||||||||| || ||||||    
T  21608493 taggattgaccagttgagacattttttgtacatcagtaatttctttgtcaattttgatgtttcctcttatgttgaaatc 21608571  T

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