View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14858_low_19 (Length: 266)

Name: NF14858_low_19
Description: NF14858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14858_low_19
NF14858_low_19
[»] chr7 (2 HSPs)
chr7 (19-249)||(1808181-1808412)
chr7 (161-229)||(46987086-46987149)
[»] chr5 (4 HSPs)
chr5 (161-231)||(6624774-6624839)
chr5 (196-236)||(18619029-18619069)
chr5 (159-231)||(32200443-32200510)
chr5 (163-231)||(37932328-37932391)
[»] chr8 (2 HSPs)
chr8 (159-231)||(11708984-11709051)
chr8 (164-231)||(13575287-13575349)
[»] chr4 (5 HSPs)
chr4 (196-235)||(21317366-21317405)
chr4 (159-229)||(19908692-19908757)
chr4 (162-231)||(38453263-38453327)
chr4 (163-231)||(20799394-20799457)
chr4 (159-231)||(22630356-22630423)
[»] chr1 (5 HSPs)
chr1 (164-231)||(7484691-7484757)
chr1 (154-231)||(21400014-21400086)
chr1 (161-230)||(47528445-47528509)
chr1 (159-231)||(17139513-17139580)
chr1 (164-228)||(34083637-34083700)
[»] chr2 (5 HSPs)
chr2 (161-231)||(7206123-7206188)
chr2 (162-231)||(20565074-20565138)
chr2 (163-239)||(24593366-24593437)
chr2 (159-231)||(31815883-31815950)
chr2 (196-232)||(43484693-43484729)
[»] chr6 (2 HSPs)
chr6 (197-230)||(15869132-15869165)
chr6 (161-229)||(655747-655810)
[»] chr3 (1 HSPs)
chr3 (159-235)||(10922304-10922375)


Alignment Details
Target: chr7 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 19 - 249
Target Start/End: Complemental strand, 1808412 - 1808181
Alignment:
Q  19 gttgatactcttcaaagtaatctagttgtgtatgcatttttaccacatttatctgcaaacaaaagctgcattatcaaggtttacagtgtcacatgtaatt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1808412 gttgatactcttcaaagtaatctagttgtgtatgcatttttaccacatttatctgcaaacaaaagctgcattatcaaggtttacagtgtcacatgtaatt 1808313  T
Q  119 tggccactaacttatagcatgtatta-annnnnnnngtggtgtcggggttcgaacctcggaacttgcatatatcatgatatgcattgtcactgccaactg 217  Q
    ||||||||||||||||||||||||||          |||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  1808312 tggccactaacttatagcatgtattattatttttttgtggtgccggggttcgaacctcggaacttgcatatattatgatatgcattgtcactgccaactg 1808213  T
Q  218 agctaagctcacgaaaacttataacatatatt 249  Q
    ||||||||||||||||||||||||||| ||||    
T  1808212 agctaagctcacgaaaacttataacatgtatt 1808181  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 229
Target Start/End: Complemental strand, 46987149 - 46987086
Alignment:
Q  161 cggggttcgaacctcggaacttgcatatatcatgatatgcattgtcactgccaactgagctaagctcac 229  Q
    ||||||||||||| |||| |||||||||||     |||||||||||  | |||||||||||||||||||    
T  46987149 cggggttcgaaccccggaccttgcatatat-----tatgcattgtccttaccaactgagctaagctcac 46987086  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 161 - 231
Target Start/End: Complemental strand, 6624839 - 6624774
Alignment:
Q  161 cggggttcgaacctcggaacttgcatatatcatgatatgcattgtcactgccaactgagctaagctcacga 231  Q
    ||||||||||||| |||| |||||||||||     |||||||||||  |||||||||||||||||||||||    
T  6624839 cggggttcgaaccccggaccttgcatatat-----tatgcattgtccatgccaactgagctaagctcacga 6624774  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 236
Target Start/End: Complemental strand, 18619069 - 18619029
Alignment:
Q  196 tatgcattgtcactgccaactgagctaagctcacgaaaact 236  Q
    ||||||||||| |||||| ||||||||||||||||| ||||    
T  18619069 tatgcattgtctctgccagctgagctaagctcacgagaact 18619029  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 231
Target Start/End: Original strand, 32200443 - 32200510
Alignment:
Q  159 gtcggggttcgaacctcggaacttgcatatatcatgatatgcattgtcactgccaactgagctaagctcacga 231  Q
    ||||||| | ||||| |||| |||||||||||     ||||||||||| ||| ||||||||||||||||||||    
T  32200443 gtcggggcttgaaccccggaccttgcatatat-----tatgcattgtccctgtcaactgagctaagctcacga 32200510  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 231
Target Start/End: Complemental strand, 37932391 - 37932328
Alignment:
Q  163 gggttcgaacctcggaacttgcatatatcatgatatgcattgtcactgccaactgagctaagctcacga 231  Q
    ||||||||||| |||| |||||||||||     |||||||||||  | |||||||||||||||||||||    
T  37932391 gggttcgaaccccggaccttgcatatat-----tatgcattgtccataccaactgagctaagctcacga 37932328  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 231
Target Start/End: Complemental strand, 11709051 - 11708984
Alignment:
Q  159 gtcggggttcgaacctcggaacttgcatatatcatgatatgcattgtcactgccaactgagctaagctcacga 231  Q
    ||||||||| |||| ||||| |||||||||||     ||||||||||| || |||||||||||||||||||||    
T  11709051 gtcggggtttgaacttcggaccttgcatatat-----tatgcattgtccctaccaactgagctaagctcacga 11708984  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 164 - 231
Target Start/End: Complemental strand, 13575349 - 13575287
Alignment:
Q  164 ggttcgaacctcggaacttgcatatatcatgatatgcattgtcactgccaactgagctaagctcacga 231  Q
    ||||||||||||||||||||||||| |     ||||||||||| || ||||||||||||| |||||||    
T  13575349 ggttcgaacctcggaacttgcatatgt-----tatgcattgtccctaccaactgagctaaactcacga 13575287  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 196 - 235
Target Start/End: Original strand, 21317366 - 21317405
Alignment:
Q  196 tatgcattgtcactgccaactgagctaagctcacgaaaac 235  Q
    ||||||||||| || |||||||||||||||||||||||||    
T  21317366 tatgcattgtctctaccaactgagctaagctcacgaaaac 21317405  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 229
Target Start/End: Complemental strand, 19908757 - 19908692
Alignment:
Q  159 gtcggggttcgaacctcggaacttgcatatatcatgatatgcattgtcactgccaactgagctaagctcac 229  Q
    |||||||||||||||||||| |||||||||||     |||||||||||  | ||||||||| |||||||||    
T  19908757 gtcggggttcgaacctcggaccttgcatatat-----tatgcattgtccttaccaactgagttaagctcac 19908692  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 162 - 231
Target Start/End: Complemental strand, 38453327 - 38453263
Alignment:
Q  162 ggggttcgaacctcggaacttgcatatatcatgatatgcattgtcactgccaactgagctaagctcacga 231  Q
    ||||||||||||  ||| |||||||||||     |||||||||||  |||||||||||||||||||||||    
T  38453327 ggggttcgaaccctggaccttgcatatat-----tatgcattgtccatgccaactgagctaagctcacga 38453263  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 231
Target Start/End: Original strand, 20799394 - 20799457
Alignment:
Q  163 gggttcgaacctcggaacttgcatatatcatgatatgcattgtcactgccaactgagctaagctcacga 231  Q
    ||||| ||||| |||| |||||||||||     ||||||||||| || |||||||||||||||||||||    
T  20799394 gggtttgaaccccggaccttgcatatat-----tatgcattgtccctaccaactgagctaagctcacga 20799457  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 231
Target Start/End: Original strand, 22630356 - 22630423
Alignment:
Q  159 gtcggggttcgaacctcggaacttgcatatatcatgatatgcattgtcactgccaactgagctaagctcacga 231  Q
    ||||||||| ||||||| || |||||||||||     |||||||||||||| ||||||||| ||| |||||||    
T  22630356 gtcggggtttgaacctcagaccttgcatatat-----tatgcattgtcactaccaactgagataatctcacga 22630423  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 164 - 231
Target Start/End: Original strand, 7484691 - 7484757
Alignment:
Q  164 ggttcgaacctcggaacttgcatatatcatgatatgcattgtcactgccaactgagctaagctcacga 231  Q
    |||| |||||||||| ||||||||||| ||  ||||||||||| || ||| |||||||||||||||||    
T  7484691 ggtttgaacctcggaccttgcatatat-atattatgcattgtctctaccagctgagctaagctcacga 7484757  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 154 - 231
Target Start/End: Original strand, 21400014 - 21400086
Alignment:
Q  154 gtggtgtcggggttcgaacctcggaacttgcatatatcatgatatgcattgtcactgccaactgagctaagctcacga 231  Q
    |||||||| |||||||||||   || |||||||||||     ||||||||||| || |||||||||||||||||||||    
T  21400014 gtggtgtcagggttcgaacccaagaccttgcatatat-----tatgcattgtccctaccaactgagctaagctcacga 21400086  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 161 - 230
Target Start/End: Original strand, 47528445 - 47528509
Alignment:
Q  161 cggggttcgaacctcggaacttgcatatatcatgatatgcattgtcactgccaactgagctaagctcacg 230  Q
    |||||||||||||||||| ||||| |||||     |||||||||||  | ||||||||||||||||||||    
T  47528445 cggggttcgaacctcggaccttgcgtatat-----tatgcattgtccttaccaactgagctaagctcacg 47528509  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 231
Target Start/End: Original strand, 17139513 - 17139580
Alignment:
Q  159 gtcggggttcgaacctcggaacttgcatatatcatgatatgcattgtcactgccaactgagctaagctcacga 231  Q
    ||||||||| ||||| |||| |||| ||||||     ||||||||||| || |||||||||||||||||||||    
T  17139513 gtcggggtttgaaccccggaccttgaatatat-----tatgcattgtccctaccaactgagctaagctcacga 17139580  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 228
Target Start/End: Original strand, 34083637 - 34083700
Alignment:
Q  164 ggttcgaacctcggaacttgcatatatcatgatatgcattgtcactgccaactgagctaagctca 228  Q
    |||||||||| |||| ||| ||||||| || |||||||||||| || ||||||||| ||||||||    
T  34083637 ggttcgaaccccggaccttacatatattat-atatgcattgtccctaccaactgagttaagctca 34083700  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 231
Target Start/End: Complemental strand, 7206188 - 7206123
Alignment:
Q  161 cggggttcgaacctcggaacttgcatatatcatgatatgcattgtcactgccaactgagctaagctcacga 231  Q
    |||||||  ||||||||| |||||||||||     ||||||||||| || |||||||||||||||||||||    
T  7206188 cggggtttaaacctcggaccttgcatatat-----tatgcattgtctctaccaactgagctaagctcacga 7206123  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 162 - 231
Target Start/End: Original strand, 20565074 - 20565138
Alignment:
Q  162 ggggttcgaacctcggaacttgcatatatcatgatatgcattgtcactgccaactgagctaagctcacga 231  Q
    |||||| ||||| |||| |||||||||||     ||||||||||| || |||||||||||||||||||||    
T  20565074 ggggtttgaaccccggaccttgcatatat-----tatgcattgtccctaccaactgagctaagctcacga 20565138  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 239
Target Start/End: Complemental strand, 24593437 - 24593366
Alignment:
Q  163 gggttcgaacctcggaacttgcatatatcatgatatgcattgtcactgccaactgagctaagctcacgaaaacttat 239  Q
    ||||||||||| |||| |||||||||||     |||||||||||  | |||||||||||||||||||| | ||||||    
T  24593437 gggttcgaaccccggaccttgcatatat-----tatgcattgtccttaccaactgagctaagctcacggagacttat 24593366  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 231
Target Start/End: Original strand, 31815883 - 31815950
Alignment:
Q  159 gtcggggttcgaacctcggaacttgcatatatcatgatatgcattgtcactgccaactgagctaagctcacga 231  Q
    ||||||||| ||||| |||| |||||||||||     ||||||||||| || ||||||||| |||||||||||    
T  31815883 gtcggggtttgaaccccggaccttgcatatat-----tatgcattgtccctaccaactgagttaagctcacga 31815950  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 232
Target Start/End: Original strand, 43484693 - 43484729
Alignment:
Q  196 tatgcattgtcactgccaactgagctaagctcacgaa 232  Q
    ||||||||||| ||||||||||||||||||| |||||    
T  43484693 tatgcattgtctctgccaactgagctaagcttacgaa 43484729  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 197 - 230
Target Start/End: Original strand, 15869132 - 15869165
Alignment:
Q  197 atgcattgtcactgccaactgagctaagctcacg 230  Q
    ||||| ||||||||||||||||||||||||||||    
T  15869132 atgcaatgtcactgccaactgagctaagctcacg 15869165  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 229
Target Start/End: Original strand, 655747 - 655810
Alignment:
Q  161 cggggttcgaacctcggaacttgcatatatcatgatatgcattgtcactgccaactgagctaagctcac 229  Q
    ||||||||||||| |||| |||||||||||     |||||||||||  | |||||||||||||||||||    
T  655747 cggggttcgaaccccggaccttgcatatat-----tatgcattgtcgataccaactgagctaagctcac 655810  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 235
Target Start/End: Original strand, 10922304 - 10922375
Alignment:
Q  159 gtcggggttcgaacctcggaacttgcatatatcatgatatgcattgtcactgccaactgagctaagctcacgaaaac 235  Q
    ||||||||| ||||| |||| |||||||||||     ||||||||||| || ||||||||| |||||||||| ||||    
T  10922304 gtcggggtttgaaccccggatcttgcatatat-----tatgcattgtccctaccaactgagttaagctcacgcaaac 10922375  T

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