View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14858_low_2 (Length: 571)
Name: NF14858_low_2
Description: NF14858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14858_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 18 - 557
Target Start/End: Original strand, 36541089 - 36541634
Alignment:
| Q |
18 |
acaagggcaaggcaatgctcatgcaaataatggagaattacnnnnnnnnnnnnnngatgtagaagatattgtttgtagcattgattattatatgtgcaag |
117 |
Q |
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| T |
36541089 |
acaagggcaaggcaatgctcatgcaaagaatggagaattacatat----------gatgtagaagatattgtttgtagcattgattattatacgtgcaag |
36541178 |
T |
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| Q |
118 |
taatatccaagttgtatcctacatgtagcaatcaatgagaaatacaatttgatcattgtagttaagaatcatattatgaggaagagatggttcctttaat |
217 |
Q |
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| T |
36541179 |
taatatccaagttgtatcctacatgtagcaatcaatgagaaatacaatttgatcattgtagttaagaatcatattatgaggaagagatggttcctttaat |
36541278 |
T |
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| Q |
218 |
caaaacctagttcatgaaaattagtgtaaattgaaaacaaattttcaaaacttagtcaacaatagtcaattatctcaatcttgat---nnnnnnnnnnnt |
314 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
36541279 |
caaaacctagttcatgaaaattactgtaaattgaaaacaaattttcaaaacttagtcaacaatagtcaattatctcaatcttgatcaaaataaaaaaaat |
36541378 |
T |
|
| Q |
315 |
tgaaatttgaagttcataattttcaaagtcactatgtgagtcattcgaccttttctcaaaaacataagta-------------aataatcaattacaact |
401 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
36541379 |
tgaaatttgaagttcataattttcaaaatcactatgtgagtcattcgaccttttctcaaaaacataagtaaattaccaattataataatcaattacaact |
36541478 |
T |
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| Q |
402 |
acaaaaaatttagatccatgtatataaactacttacctatcaatggaaaaattagctgatgataacgaaattccaactccgtgagactcatcatcatcgt |
501 |
Q |
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| T |
36541479 |
acaaaaaatttagatccatgtatataaactacttacctatcaatggaaaaattagctgatgataacgaaattccaactccgtgagactcatcatcatcgt |
36541578 |
T |
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| Q |
502 |
ctacatgaatattgcatccggtgaatccaaaagatacaatatctacgagttcatct |
557 |
Q |
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| T |
36541579 |
ctacatgaatattgcatccggtgaatccaaaagatacaatatctacgagttcatct |
36541634 |
T |
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