View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14858_low_20 (Length: 262)
Name: NF14858_low_20
Description: NF14858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14858_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 9334925 - 9335169
Alignment:
| Q |
1 |
tcatcaggtttggtaaataacagttttaagatactcggtagaaagattgtaatgaagaaagaatcaaagaaccatagctcttattattctttttgggtct |
100 |
Q |
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| T |
9334925 |
tcataaggtttggtaaataacagttttaagatactcggtagaaagattgtaatgaagaaagaatcaaagaaccatagctcttattattctttttgggtct |
9335024 |
T |
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| Q |
101 |
acgaaggtttgctgcctctaaacatctacatatataagaacctatatattaaaccccaaaaagagttattgttagacatataagtgtatccgatcaacta |
200 |
Q |
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| T |
9335025 |
acgaaggtttgctgcctctaaacatctacatatataagaacctatacattaaaccccaaaaagagttattgttagacatataagtgtatccgatcaacta |
9335124 |
T |
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| Q |
201 |
agtttcaaatttacagcaccataattattcataatacaagtggtc |
245 |
Q |
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| T |
9335125 |
agtttcaaatttacagcaccataattattcataatacaagtggtc |
9335169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 142 - 245
Target Start/End: Original strand, 9329260 - 9329363
Alignment:
| Q |
142 |
ctatatattaaaccccaaaaagagttattgttagacatataagtgtatccgatcaactaagtttcaaatttacagcaccataattattcataatacaagt |
241 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9329260 |
ctatacattaaaccccaaaaagagttattgttagacatataagtgtatccgatcaactaagtttcaaatttacagcaccataattattcataatacaagt |
9329359 |
T |
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| Q |
242 |
ggtc |
245 |
Q |
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|||| |
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| T |
9329360 |
ggtc |
9329363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 40 - 122
Target Start/End: Original strand, 9356695 - 9356777
Alignment:
| Q |
40 |
agaaagattgtaatgaagaaagaatcaaagaaccatagctcttattattctttttgggtctacgaaggtttgctgcctctaaa |
122 |
Q |
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||||||||||||||| |||||||||||||||| |||| |||||||| | ||||| || | ||||||||| |||||||||| |
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| T |
9356695 |
agaaagattgtaatggagaaagaatcaaagaagcataactcttattttacttttcaagttttagaaggtttgttgcctctaaa |
9356777 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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