View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14858_low_21 (Length: 258)
Name: NF14858_low_21
Description: NF14858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14858_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 77; Significance: 8e-36; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 16 - 122
Target Start/End: Original strand, 36206319 - 36206427
Alignment:
| Q |
16 |
attattagttgaaatctctatctcatgagaa-gcttgaatgagtagttttgtttatttctgg-ttttaattttagttaggagtatagagattgatgaaga |
113 |
Q |
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|||||| || ||||||||||||||||||||| ||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| |
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| T |
36206319 |
attatttgtggaaatctctatctcatgagaaagcttgaatgtgtagttttgtttatttctgggttttaattatagttaggagtatagagattgatgaaga |
36206418 |
T |
|
| Q |
114 |
tggagttat |
122 |
Q |
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||||||||| |
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| T |
36206419 |
tggagttat |
36206427 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 205 - 248
Target Start/End: Original strand, 36206515 - 36206558
Alignment:
| Q |
205 |
atatggaagagataaaaacaccttctcttcctctggaataccct |
248 |
Q |
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| T |
36206515 |
atatggaagagataaaaacactttctcttcatctggaataccct |
36206558 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 77; Significance: 8e-36; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 16 - 122
Target Start/End: Original strand, 382525 - 382633
Alignment:
| Q |
16 |
attattagttgaaatctctatctcatgagaa-gcttgaatgagtagttttgtttatttctgg-ttttaattttagttaggagtatagagattgatgaaga |
113 |
Q |
| |
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|||||| |||||||| ||||||||||||||| ||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
382525 |
attatttgttgaaatatctatctcatgagaaagctagaatgtgtagttttgtttatttctgggttttaattttagttaggagtatagagattgatgaaga |
382624 |
T |
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| Q |
114 |
tggagttat |
122 |
Q |
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||||||||| |
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| T |
382625 |
tggagttat |
382633 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 187 - 256
Target Start/End: Original strand, 382708 - 382777
Alignment:
| Q |
187 |
gttgagattgatgaatatatatggaagagataaaaacaccttctcttcctctggaataccctttgcttct |
256 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |
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| T |
382708 |
gttgagattgatgaatatatatggaagagataaaaacactttctcttcctctggaataccctttccttct |
382777 |
T |
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