View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14858_low_23 (Length: 224)
Name: NF14858_low_23
Description: NF14858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14858_low_23 |
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Alignment Details
Target: chr7 (Bit Score: 92; Significance: 8e-45; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 16 - 132
Target Start/End: Complemental strand, 3594386 - 3594274
Alignment:
| Q |
16 |
aagaatatgcaattaaaatacacaaaacatctgttctgggatttaagtaagtaccttgcttgcgtaattcattgttctaacttctcaacgctgaaagtta |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || ||||||||||||||||||||||||||| |
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| T |
3594386 |
aagaatatgcaattaaaatacacaaaacatctgttctgggatttaagtaagtacc----ttgcgtaattgatcgttctaacttctcaacgctgaaagtta |
3594291 |
T |
|
| Q |
116 |
cacaggctactattatc |
132 |
Q |
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||||||||||||||||| |
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| T |
3594290 |
cacaggctactattatc |
3594274 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 23 - 69
Target Start/End: Original strand, 35714620 - 35714666
Alignment:
| Q |
23 |
tgcaattaaaatacacaaaacatctgttctgggatttaagtaagtac |
69 |
Q |
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||||||||||||| |||||||||||||||||| |||||||||||||| |
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| T |
35714620 |
tgcaattaaaatatacaaaacatctgttctggtatttaagtaagtac |
35714666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 23 - 69
Target Start/End: Complemental strand, 28934199 - 28934153
Alignment:
| Q |
23 |
tgcaattaaaatacacaaaacatctgttctgggatttaagtaagtac |
69 |
Q |
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||||||||||||| |||||||||||||||||| |||||||| ||||| |
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| T |
28934199 |
tgcaattaaaatatacaaaacatctgttctggcatttaagtgagtac |
28934153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 16 - 132
Target Start/End: Complemental strand, 8490730 - 8490618
Alignment:
| Q |
16 |
aagaatatgcaattaaaatacacaaaacatctgttctgggatttaagtaagtaccttgcttgcgtaattcattgttctaacttctcaacgctgaaagtta |
115 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| || ||||||||||||||| |||||||||||||| |
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| T |
8490730 |
aagaatatgcaattaaaataaacaaaacatctgttctgggatttaagtaagtacc----ttgcgtatttgattgttctaacttctgaacgctgaaagtta |
8490635 |
T |
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| Q |
116 |
cacaggctactattatc |
132 |
Q |
| |
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|||||| |||||||||| |
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| T |
8490634 |
cacaggatactattatc |
8490618 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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