View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14858_low_27 (Length: 212)
Name: NF14858_low_27
Description: NF14858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14858_low_27 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 72; Significance: 6e-33; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 141 - 212
Target Start/End: Original strand, 36615534 - 36615605
Alignment:
| Q |
141 |
gggaggaacaacaaaaactgcacatatataactacatgtaagtttgtcctttcgaaaatccttttaagtttt |
212 |
Q |
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| T |
36615534 |
gggaggaacaacaaaaactgcacatatataactacatgtaagtttgtcctttcgaaaatccttttaagtttt |
36615605 |
T |
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Target: chr4; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 36615388 - 36615439
Alignment:
| Q |
1 |
cgcacagttaaaataaaatatgagaaaagagaaactgaacatacattattta |
52 |
Q |
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| T |
36615388 |
cgcacagttaaaataagatatgagaaaagagaaaccgaacatacattattta |
36615439 |
T |
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Target: chr7 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 30235308 - 30235259
Alignment:
| Q |
3 |
cacagttaaaataaaatatgagaaaagagaaactgaacatacattattta |
52 |
Q |
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| T |
30235308 |
cacagctaaaataaaaaatgagaaaagaggaactgaacacacaatattta |
30235259 |
T |
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