View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14858_low_29 (Length: 205)
Name: NF14858_low_29
Description: NF14858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14858_low_29 |
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Alignment Details
Target: chr7 (Bit Score: 172; Significance: 1e-92; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 16 - 187
Target Start/End: Complemental strand, 33777407 - 33777236
Alignment:
| Q |
16 |
aatatagtagaaagctagcaatagagacaaacattgtctttggatggacatgaaatgcagtgggattatctggataactaatttgaaggaaaccaatgag |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33777407 |
aatatagtagaaagctagcaatagagacaaacattgtctttggatggacatgaaatgcagtgggattatctggataactaatttgaaggaaaccaatgag |
33777308 |
T |
|
| Q |
116 |
tacaaagaaaatgaaggccataaggccatgaaaaggattggtttctacacccatgatgttataaacattaac |
187 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33777307 |
tacaaagaaaatgaaggccataaggccatgaaaaggattggtttctacacccatgatgttataaacattaac |
33777236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 139; E-Value: 6e-73
Query Start/End: Original strand, 16 - 188
Target Start/End: Complemental strand, 33774768 - 33774597
Alignment:
| Q |
16 |
aatatagtagaaa-gctagcaatagagacaaacattgtctttggatggacatgaaatgcagtgggattatctggataactaatttgaaggaaaccaatga |
114 |
Q |
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||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33774768 |
aatatagtagaaaagctagcaatagtgacaaacattgtctttggatggacatgaaatgcagtgggattatctggataactaatttgaaggaaaccaatga |
33774669 |
T |
|
| Q |
115 |
gtacaaagaaaatgaaggccataaggccatgaaaaggattggtttctacacccatgatgttataaacattaact |
188 |
Q |
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| T |
33774668 |
gtcc--agaaaatgaaggccataaggccatgaaaatgattggtttctactcccatgatgttataaacattaact |
33774597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 116; Significance: 3e-59; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 16 - 187
Target Start/End: Original strand, 10657628 - 10657799
Alignment:
| Q |
16 |
aatatagtagaaagctagcaatagagacaaacattgtctttggatggacatgaaatgcagtgggattatctggataactaatttgaaggaaaccaatgag |
115 |
Q |
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||||||||||||||||||| | ||||| | |||||||||||||||| | ||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
10657628 |
aatatagtagaaagctagctacagagagtagcattgtctttggatgggcttgaaatgcagtgggattatttggataactaatttgaaggaaaccaatgag |
10657727 |
T |
|
| Q |
116 |
tacaaagaaaatgaaggccataaggccatgaaaaggattggtttctacacccatgatgttataaacattaac |
187 |
Q |
| |
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|||||||||| ||||| |||||||||||| | ||||||||||||||| ||||||||||||||||||||||| |
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| T |
10657728 |
gacaaagaaaaggaaggtcataaggccatggagaggattggtttctactcccatgatgttataaacattaac |
10657799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 16 - 187
Target Start/End: Original strand, 10707547 - 10707718
Alignment:
| Q |
16 |
aatatagtagaaagctagcaatagagacaaacattgtctttggatggacatgaaatgcagtgggattatctggataactaatttgaaggaaaccaatgag |
115 |
Q |
| |
|
||||||||||||||||||||| ||||| | |||||| |||||||||| ||||||||||||||||||||||||||| ||||||| |||||| ||| ||| |
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| T |
10707547 |
aatatagtagaaagctagcaacagagattatcattgtttttggatggatttgaaatgcagtgggattatctggataagtaatttggaggaaagcaaggag |
10707646 |
T |
|
| Q |
116 |
tacaaagaaaatgaaggccataaggccatgaaaaggattggtttctacacccatgatgttataaacattaac |
187 |
Q |
| |
|
|||||||||||||||||||||||||| ||| | ||| ||||||||||| ||||||||||| ||||||||||| |
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| T |
10707647 |
tacaaagaaaatgaaggccataaggctatgtagagggttggtttctactcccatgatgttgtaaacattaac |
10707718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 16 - 187
Target Start/End: Original strand, 10634053 - 10634224
Alignment:
| Q |
16 |
aatatagtagaaagctagcaatagagacaaacattgtctttggatggacatgaaatgcagtgggattatctggataactaatttgaaggaaaccaatgag |
115 |
Q |
| |
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||||||||| ||| ||||| ||||||||||||||||||||||||||||| | ||| | || ||||| |||||||| | |||||| |||||||||||||| |
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| T |
10634053 |
aatatagtaaaaaactagccatagagacaaacattgtctttggatggacttcaaacgaggttggattttctggatatcgaatttggaggaaaccaatgag |
10634152 |
T |
|
| Q |
116 |
tacaaagaaaatgaaggccataaggccatgaaaaggattggtttctacacccatgatgttataaacattaac |
187 |
Q |
| |
|
|||||| |||||||||||||||||| |||||||||||||| ||||||| ||| || ||| || ||||||||| |
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|
| T |
10634153 |
tacaaaaaaaatgaaggccataaggacatgaaaaggattgttttctactcccttggtgtcatgaacattaac |
10634224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 15 - 161
Target Start/End: Original strand, 10693750 - 10693896
Alignment:
| Q |
15 |
gaatatagtagaaagctagcaatagagacaaacattgtctttggatggacatgaaatgcagtgggattatctggataactaatttgaaggaaaccaatga |
114 |
Q |
| |
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||||||| |||||||||||||| ||||| | ||||||||||||||||| ||||||||| |||| |||||||||||||| ||||| |||||||||| || |
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| T |
10693750 |
gaatatattagaaagctagcaacagagagtatcattgtctttggatggatttgaaatgcactgggtttatctggataactgatttggaggaaaccaagga |
10693849 |
T |
|
| Q |
115 |
gtacaaagaaaatgaaggccataaggccatgaaaaggattggtttct |
161 |
Q |
| |
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||||||||||| ||||||||||||| | ||||| ||||||||||||| |
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| T |
10693850 |
gtacaaagaaagtgaaggccataagacaatgaagaggattggtttct |
10693896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 16 - 175
Target Start/End: Original strand, 10690405 - 10690564
Alignment:
| Q |
16 |
aatatagtagaaagctagcaatagagacaaacattgtctttggatggacatgaaatgcagtgggattatctggataactaatttgaaggaaaccaatgag |
115 |
Q |
| |
|
||||||||||||||||||||||||| || ||| |||||||||||||||| ||||| | || ||||| |||||||| |||| ||| |||||||||| ||| |
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| T |
10690405 |
aatatagtagaaagctagcaatagataccaacgttgtctttggatggacttgaaaaggggtaggattttctggatatctaacttggaggaaaccaaggag |
10690504 |
T |
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| Q |
116 |
tacaaagaaaatgaaggccataaggccatgaaaaggattggtttctacacccatgatgtt |
175 |
Q |
| |
|
|||||||||||||||||| | ||||||||| |||||| |||||||| ||||||||||| |
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| T |
10690505 |
tacaaagaaaatgaaggctacaaggccatgttgaggattagtttctactcccatgatgtt |
10690564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 16 - 177
Target Start/End: Original strand, 10698338 - 10698499
Alignment:
| Q |
16 |
aatatagtagaaagctagcaatagagacaaacattgtctttggatggacatgaaatgcagtgggattatctggataactaatttgaaggaaaccaatgag |
115 |
Q |
| |
|
||||||| ||||| ||||||||||| || ||| || |||||||||||| ||||||| || ||||| ||||| || |||||||| |||||||||| ||| |
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| T |
10698338 |
aatataggagaaaactagcaatagacactaacgttatctttggatggatttgaaatggggtaggattttctgggtatctaatttggaggaaaccaaggag |
10698437 |
T |
|
| Q |
116 |
tacaaagaaaatgaaggccataaggccatgaaaaggattggtttctacacccatgatgttat |
177 |
Q |
| |
|
|||||||||||| ||||| | ||||||||| |||||| ||||| | ||||||||||||| |
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|
| T |
10698438 |
tacaaagaaaataaaggctacaaggccatgttgaggattagtttccattcccatgatgttat |
10698499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 13 - 175
Target Start/End: Complemental strand, 15240431 - 15240269
Alignment:
| Q |
13 |
aagaatatagtagaaagctagcaatagagacaaacattgtctttggatggacatgaaatgcagtgggattatctggataactaatttgaaggaaaccaat |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| | ||||||||||||||||||| ||||| || ||||| || |
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| T |
15240431 |
aagaatatagtagaaagctagcaatagagactaacattgtctttggatggagttgaaagactgtgggattatctggataacagatttggagaaaacctat |
15240332 |
T |
|
| Q |
113 |
gagtacaaagaaaatgaaggccataaggccatgaaaaggattggtttctacacccatgatgtt |
175 |
Q |
| |
|
|| ||| | ||||||||||||| ||| ||||||| || ||||||| ||| ||||||||||| |
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|
| T |
15240331 |
aagcacataaaaaatgaaggccacaagaccatgaagagaattggttgctattcccatgatgtt |
15240269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 16 - 161
Target Start/End: Complemental strand, 15246762 - 15246621
Alignment:
| Q |
16 |
aatatagtagaaagctagcaatagagacaaacattgtctttggatggacatgaaatgcagtgggattatctggataactaatttgaaggaaaccaatgag |
115 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||| | ||||| | ||||||||||||||||| |||||| | ||||||| |||| |
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| T |
15246762 |
aatatagtagaaagctagcaatagagactaacattgtctttggattg--ttgaaaggttgtgggattatctggatagctaattcg--ggaaacctctgag |
15246667 |
T |
|
| Q |
116 |
tacaaagaaaatgaaggccataaggccatgaaaaggattggtttct |
161 |
Q |
| |
|
|||| | |||| ||||||| | ||||||||| ||||||||||||| |
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|
| T |
15246666 |
tacacaaaaaaataaggccacagggccatgaagaggattggtttct |
15246621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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