View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14858_low_3 (Length: 511)
Name: NF14858_low_3
Description: NF14858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14858_low_3 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 436; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 1 - 511
Target Start/End: Complemental strand, 33222211 - 33221699
Alignment:
| Q |
1 |
cttgatgtaagtgaaacttggtttaagtttattttctctagttatgttgagcctcataattaagaacctgggaaatcaaatgatcttgtgatgaatatga |
100 |
Q |
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||||||||||||||| |||||||| |||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
33222211 |
cttgatgtaagtgaaccttggttttagtttattttctctagttatgttgcgcctaataattaagaacctgggaaatcaaatgatcttgtaatgaatatga |
33222112 |
T |
|
| Q |
101 |
atctaaataagttgtagcaaacatgtgagtgctttcttactatatagttaatgaatctactaccaattaagtatgtttgctgcatcttttatgtgtatta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33222111 |
atctaaataagttgtagcaaacatgtgagtgctttcttactatatagttaatgaatctactaccaattaagtatgtttgctgcatcttttatgtgtatta |
33222012 |
T |
|
| Q |
201 |
tatgtgtataaagccaagtacagattgtaagagattttcaatacattgactagtttatcaatcctttggcttgcaattaaagcaacttctaggggttcag |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33222011 |
tatgtgtataaagccaagtacagattgtaagagattttcaatacattgactagtttatcaatcctttggcttgcaattaaagcaacttctaggggttcag |
33221912 |
T |
|
| Q |
301 |
attctctccatttggataggaaaatgcactccgttctcttttaaattcacgtgacacatggccctaatagaaattgatgaaagaaaagtaaacgaatc-- |
398 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33221911 |
attctctccatttggataggaaaatgcactccgttctcttttaaattcacatgacacatggccctaatagaaattgatgaaagaaaagtaaacgaatcat |
33221812 |
T |
|
| Q |
399 |
atacaaaagataaaagaaaagtggtgtgtcgaaattacgtactagagatagatgccatctcctgtcnnnnnnnnnnnnnngaagaagacttagatgtcac |
498 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
33221811 |
atacaaaagataaaagaaaagtggtgtgtcgaaattacgtactagagatagatgccatctcctgtcaaaaaaggaaaaaagaagaagacttagatgtcac |
33221712 |
T |
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| Q |
499 |
ggaatcaaataaa |
511 |
Q |
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||||||||||||| |
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| T |
33221711 |
ggaatcaaataaa |
33221699 |
T |
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