View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14858_low_5 (Length: 445)

Name: NF14858_low_5
Description: NF14858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14858_low_5
NF14858_low_5
[»] chr1 (1 HSPs)
chr1 (18-441)||(34055253-34055676)
[»] chr3 (9 HSPs)
chr3 (269-369)||(47381252-47381351)
chr3 (86-273)||(47381702-47381872)
chr3 (269-365)||(47816721-47816816)
chr3 (103-190)||(47817261-47817348)
chr3 (271-351)||(45113354-45113434)
chr3 (367-423)||(47381173-47381229)
chr3 (209-273)||(47817195-47817259)
chr3 (367-429)||(47816634-47816694)
chr3 (79-176)||(45114470-45114569)
[»] chr8 (2 HSPs)
chr8 (271-369)||(40243962-40244059)
chr8 (58-242)||(40244398-40244582)


Alignment Details
Target: chr1 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 18 - 441
Target Start/End: Original strand, 34055253 - 34055676
Alignment:
Q  18 atgtcaagccaaatcatagaatggtagatgaacaatagacaagaactgctggtccggagatggtagataaacaatacacgtgcctgttgaagttgaactc 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  34055253 atgtcaagccaaatcatagaatggtagatgaacaatagacaagaactgctggtccggagatggtagataaacaatacatgtgcctgttgaagttgaactc 34055352  T
Q  118 gagaagcagcttcggcattcaaatctatagctttgtcaggcaaaaattgatcactgcagaagacataattattttatgaacgagaaaatacttaagataa 217  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34055353 gagaaccagcttcggcattcaaatctatagctttgtcaggcaaaaattgatcactgcagaagacataattattttatgaacgagaaaatacttaagataa 34055452  T
Q  218 acagcaggtagaaaacaacaagatacgaagtacattttgattcattcatattcacagttggctttggcactttaactggctggaatctcctctccaaagg 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  34055453 acagcaggtagaaaacaacaagatacgaagtacattttgattcattcatattcacagttggctttggcactttcactggctggaatctcctctccaaagg 34055552  T
Q  318 tggatctttttcaatgtgcttcctgtattcatcctagagttgtggctcctatttacttaagagatggaatttgtggcaagttcagcatatgcaaaaccat 417  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34055553 tggatctttttcaatgtgcttcctgtattcatcctagtgttgtggctcctatttacttaagagatggaatttgtggcaagttcagcatatgcaaaaccat 34055652  T
Q  418 atatatgtcttcgttcttctcact 441  Q
    ||||||||||||||||||| ||||    
T  34055653 atatatgtcttcgttcttcgcact 34055676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 81; Significance: 6e-38; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 269 - 369
Target Start/End: Complemental strand, 47381351 - 47381252
Alignment:
Q  269 tcacagttggctttggcactttaactggctggaatctcctctccaaaggtggatctttttcaatgtgcttcctgtattcatcctagagttgtggctccta 368  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||||||||||    
T  47381351 tcacagttggctctggcactttaactggctggaatctcctctccaaagctggatctttttcaatgtgcttcctgtattcat-ctagtgttgtggctccta 47381253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 86 - 273
Target Start/End: Complemental strand, 47381872 - 47381702
Alignment:
Q  86 aaacaatacacgtgcctgttgaagttgaactcgagaagcagcttcggcattcaaatctatagctttgtcaggcaaaaattgatcactgcagaagacataa 185  Q
    |||||||||  |||| ||||||||| ||||||| ||| |||||||  || ||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  47381872 aaacaatacctgtgcatgttgaagtcgaactcgggaaccagcttcatcaatcaaatctatagctttgtcaggcaaaaatcgatcactgcagaagacataa 47381773  T
Q  186 ttattttatgaacgagaaaatacttaagataaacagcaggtagaaaacaacaagatacgaagtacattttgattcattcatattcaca 273  Q
    |||||                  |||||||||||||||||| ||||||||||||||||   ||||| |||||||||||||||||||||    
T  47381772 ttatt-----------------attaagataaacagcaggtggaaaacaacaagatacagggtacagtttgattcattcatattcaca 47381702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 269 - 365
Target Start/End: Complemental strand, 47816816 - 47816721
Alignment:
Q  269 tcacagttggctttggcactttaactggctggaatctcctctccaaaggtggatctttttcaatgtgcttcctgtattcatcctagagttgtggctc 365  Q
    |||||||||||| | |||||||||||||||||||| |||||||||||| |||||||| ||||||||||||||||||||||| |||| ||||||||||    
T  47816816 tcacagttggctctagcactttaactggctggaatttcctctccaaagctggatcttcttcaatgtgcttcctgtattcat-ctagtgttgtggctc 47816721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 103 - 190
Target Start/End: Complemental strand, 47817348 - 47817261
Alignment:
Q  103 gttgaagttgaactcgagaagcagcttcggcattcaaatctatagctttgtcaggcaaaaattgatcactgcagaagacataattatt 190  Q
    |||||||| ||||||| ||| |||||||| || ||||||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  47817348 gttgaagtcgaactcgggaaccagcttcgtcaatcaaatctatagctttgtcaggcaaaaatcgaccactgcagaagacataattatt 47817261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 271 - 351
Target Start/End: Complemental strand, 45113434 - 45113354
Alignment:
Q  271 acagttggctttggcactttaactggctggaatctcctctccaaaggtggatctttttcaatgtgcttcctgtattcatcc 351  Q
    |||||||| | ||| |||||||||||||||||||  |||||||||| ||| |||||||| |||||||||||||||||||||    
T  45113434 acagttggttctggtactttaactggctggaatcgtctctccaaagctgggtctttttcgatgtgcttcctgtattcatcc 45113354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 367 - 423
Target Start/End: Complemental strand, 47381229 - 47381173
Alignment:
Q  367 tatttacttaagagatggaatttgtggcaagttcagcatatgcaaaaccatatatat 423  Q
    ||||||||||||||||| || ||||||||| ||||||||||||| ||||||||||||    
T  47381229 tatttacttaagagatgaaagttgtggcaaattcagcatatgcacaaccatatatat 47381173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 209 - 273
Target Start/End: Complemental strand, 47817259 - 47817195
Alignment:
Q  209 ttaagataaacagcaggtagaaaacaacaagatacgaagtacattttgattcattcatattcaca 273  Q
    |||||||||||||||||| ||||||||||||||||   ||||| ||| |||||||||||||||||    
T  47817259 ttaagataaacagcaggtggaaaacaacaagatacagggtacagtttaattcattcatattcaca 47817195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 367 - 429
Target Start/End: Complemental strand, 47816694 - 47816634
Alignment:
Q  367 tatttacttaagagatggaatttgtggcaagttcagcatatgcaaaaccatatatatgtcttc 429  Q
    |||||||||||||||||||| |||||||||| | |||||||  | | ||||||||||||||||    
T  47816694 tatttacttaagagatggaagttgtggcaagctgagcatat--acagccatatatatgtcttc 47816634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 79 - 176
Target Start/End: Complemental strand, 45114569 - 45114470
Alignment:
Q  79 ggtagataaacaatacac--gtgcctgttgaagttgaactcgagaagcagcttcggcattcaaatctatagctttgtcaggcaaaaattgatcactgcag 176  Q
    |||||| |||||||| ||  |||| ||||||||  | ||||| ||| |||||||  || ||||||| || |||||||| ||||||||| |||||||||||    
T  45114569 ggtagacaaacaatatacctgtgcatgttgaagacggactcgtgaaccagcttcatcaatcaaatcaatggctttgtcgggcaaaaatcgatcactgcag 45114470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 271 - 369
Target Start/End: Complemental strand, 40244059 - 40243962
Alignment:
Q  271 acagttggctttggcactttaactggctggaatctcctctccaaaggtggatctttttcaatgtgcttcctgtattcatcctagagttgtggctcctat 369  Q
    |||||||||| |||||||||||| || ||||||| ||||||||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||||    
T  40244059 acagttggctctggcactttaacaggttggaatcgcctctccaaagctggatctttttcaatgtgcttcctatattcat-ctagagttgtggctcctat 40243962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 58 - 242
Target Start/End: Complemental strand, 40244582 - 40244398
Alignment:
Q  58 aagaactgctggtccggagat-ggtagataaacaatacacgtgcctgttgaagttgaactcgagaagcagcttcggcattcaaatctatagctttgtcag 156  Q
    ||||||||||||| | | ||| ||| ||| ||||||||  |||| ||||||||| | ||||| ||| |||||||  || |||||||||||||||||||||    
T  40244582 aagaactgctggttcagggattggtggatgaacaatacctgtgcatgttgaagtcggactcgggaaccagcttcatcaatcaaatctatagctttgtcag 40244483  T
Q  157 gcaaaaattgatcactgcagaagacataattattttatgaacgagaaaatacttaagataaacagcaggtagaaaacaacaagata 242  Q
    |||||||| |||| ||||| ||| ||||||||||||||||  ||||||| |||| | |||||||||| |||||| | |||||||||    
T  40244482 gcaaaaatcgatcgctgcaaaagtcataattattttatgagtgagaaaacacttga-ataaacagcaagtagaagataacaagata 40244398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University