View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14858_low_6 (Length: 434)
Name: NF14858_low_6
Description: NF14858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14858_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 15 - 416
Target Start/End: Complemental strand, 28667660 - 28667259
Alignment:
| Q |
15 |
cacagacattcttaacaaacaaaatgggacttttagattcaaaggtccttctttcagcagccttaactgcatagtcacttctgatcctcgaaacctcgaa |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28667660 |
cacagacattcttaacaaacaaaatgggacttttagattcaaaggtccttctttcagcagccttaactgcatagtcacttctgatcctcgaaacctcgaa |
28667561 |
T |
|
| Q |
115 |
caccttctcaaaaccaaattcatcaactttcctaaaggaacttactttagaaacatggtaagggacttacttggagatggtatattcagtgcagatgatg |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28667560 |
caccttctcaaaaccaaattcatcaactttcctaaaggaacttactttagaaacatggtaagggacttacttggagatggtatattcagtgcagatgatg |
28667461 |
T |
|
| Q |
215 |
aaatatggcaaaaacaaagaaaaacagcgagcatcgagtttcattcgaccaagttcagaaatttaacaactgattctttgtttgagcttgttcattcaag |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28667460 |
aaatatggcaaaaacaaagaaaaacagcgagcatcgagtttcattcgaccaagttcagaaatttaacaactgattctttgtttgagcttgttcattcaag |
28667361 |
T |
|
| Q |
315 |
gcttttacctgttttagatgaatcagttgataaaagggctgtcacagatcttcaagacattcttttaagactaacttttgacaatgtttgtatgatagct |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28667360 |
gcttttacctgttttagatgaatcagttgataaaagggctgtcacagatcttcaagacattcttttaagactaacttttgacaatgtttgtatgatagct |
28667261 |
T |
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| Q |
415 |
tt |
416 |
Q |
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|| |
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| T |
28667260 |
tt |
28667259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 181 - 416
Target Start/End: Original strand, 13887047 - 13887282
Alignment:
| Q |
181 |
ttacttggagatggtatattcagtgcagatgatgaaatatggcaaaaacaaagaaaaacagcgagcatcgagtttcattcgaccaagttcagaaatttaa |
280 |
Q |
| |
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||||||||||| ||||| ||| || |||| | |||| |||||| |||||||| ||||||||||| |||||||||||||| || ||||| || || |||| |
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| T |
13887047 |
ttacttggagacggtattttcgctgtagataacgaaacatggcagaaacaaaggaaaacagcgagtatcgagtttcattcaacaaagtttaggaaattaa |
13887146 |
T |
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| Q |
281 |
caactgattctttgtttgagcttgttcattcaaggcttttacctgttttagatgaatcagttgataaaagggctgtc-acagatcttcaagacattcttt |
379 |
Q |
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|||||||||| |||||||||||||| | ||||| ||||||| |||||| ||| ||||| ||| | | || | ||||||||||| ||| | | |
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| T |
13887147 |
caactgattcattgtttgagcttgtgaacaataggctcatacctgtcttagattcatc-gttgaagaaatcggtttccatcgatcttcaagatattttgt |
13887245 |
T |
|
| Q |
380 |
taagactaacttttgacaatgtttgtatgatagcttt |
416 |
Q |
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| T |
13887246 |
tgagactaacttttgataatgtttgtatgatagcttt |
13887282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 360 - 416
Target Start/End: Complemental strand, 13897978 - 13897922
Alignment:
| Q |
360 |
agatcttcaagacattcttttaagactaacttttgacaatgtttgtatgatagcttt |
416 |
Q |
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|||||||||||| ||| | || |||||||||||||| |||||||||||||||||||| |
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| T |
13897978 |
agatcttcaagatattttgttgagactaacttttgataatgtttgtatgatagcttt |
13897922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 212 - 283
Target Start/End: Complemental strand, 13898126 - 13898055
Alignment:
| Q |
212 |
atgaaatatggcaaaaacaaagaaaaacagcgagcatcgagtttcattcgaccaagttcagaaatttaacaa |
283 |
Q |
| |
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|||||| |||||| |||||||| |||| |||||| ||||||||||||||||| || || || || ||||||| |
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| T |
13898126 |
atgaaacatggcagaaacaaaggaaaatagcgagtatcgagtttcattcgacaaattttaggaagttaacaa |
13898055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 181 - 305
Target Start/End: Complemental strand, 1035214 - 1035090
Alignment:
| Q |
181 |
ttacttggagatggtatattcagtgcagatgatgaaatatggcaaaaacaaagaaaaacagcgagcatcgagtttcattcgaccaagttcagaaatttaa |
280 |
Q |
| |
|
||||| ||||| ||||| |||| ||| || |||||| |||||| |||||||| |||| ||| || ||||||||||||||||| || || ||||| |||| |
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| T |
1035214 |
ttactcggagacggtattttcactgctgacaatgaaacatggcagaaacaaaggaaaatagctagtatcgagtttcattcgacaaattttagaaagttaa |
1035115 |
T |
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| Q |
281 |
caactgattctttgtttgagcttgt |
305 |
Q |
| |
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||| ||| || | ||||||||||| |
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| T |
1035114 |
caaatgagtcaatttttgagcttgt |
1035090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 360 - 416
Target Start/End: Complemental strand, 1035035 - 1034979
Alignment:
| Q |
360 |
agatcttcaagacattcttttaagactaacttttgacaatgtttgtatgatagcttt |
416 |
Q |
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|||||||||||| ||| | | |||||||||||||| |||||||||||||||||||| |
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| T |
1035035 |
agatcttcaagatattttgctgagactaacttttgataatgtttgtatgatagcttt |
1034979 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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