View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14858_low_9 (Length: 370)
Name: NF14858_low_9
Description: NF14858
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14858_low_9 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 19 - 370
Target Start/End: Original strand, 39693377 - 39693728
Alignment:
| Q |
19 |
attttcttttacatgactcaaatacctaacagaaaatatacagaaagtagaaataactcatgcacaagtcacgggttgcattggtcgaaaatgacaacca |
118 |
Q |
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| T |
39693377 |
attttcttctatatgaatcaaatacctaacagaaaatatacagaaagtagaaataacacatgcacaagtcacgggttgcattggtcgaaaatgacaacca |
39693476 |
T |
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| Q |
119 |
ctacattactacgttattgcaccaaacaattatgtccgaagaaatatacacgtaacaccatatttagtaaatggcgcaatcaaacttccaccattgcata |
218 |
Q |
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| T |
39693477 |
ctaaattactacgttattgcaccaaacaattatgtccaaagaaatatacacgtaacaccatatttagtaaatggcgcaatcaaacttccaccattgcata |
39693576 |
T |
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| Q |
219 |
gcaaccccacaaaaactatactctatttatgtgcctacatacnnnnnnnttcttgattaatgttattaaccaaatccttgagccatccattgcctatatc |
318 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
39693577 |
gcaaccccacaaaaaccatactctatttatgtgcctacatacaaaaaaattcttgattaatgttattaaccaaatacttgagccatccattgcctatatc |
39693676 |
T |
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| Q |
319 |
gtctatagcaataaaaaccgtgaattacgaaacttttaaaaaggttaatagc |
370 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||| |||| |
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| T |
39693677 |
gtctatagcaataaaaaccgtgaattacgaaacttttaaaaatgttagtagc |
39693728 |
T |
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