View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14859_high_3 (Length: 396)
Name: NF14859_high_3
Description: NF14859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14859_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 151; Significance: 9e-80; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 1 - 155
Target Start/End: Original strand, 12801155 - 12801309
Alignment:
| Q |
1 |
tcaatttatctgatcctccaaagcacaaattaccaactagactttgttgtgacgatgacatctttttattctcatcctcaacattgtgaaactgaccaag |
100 |
Q |
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| T |
12801155 |
tcaatttatctgatcctccaaagcacaaattaccaactagactttgttgtgacgatgacatctttttattctcatcctcaacattgtgaaactgaccaag |
12801254 |
T |
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| Q |
101 |
attattgttatcatatattgaagtgtttccattcccaagagagttcatcaatcca |
155 |
Q |
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| T |
12801255 |
gttattgttatcatatattgaagtgtttccattcccaagagagttcatcaatcca |
12801309 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 220 - 396
Target Start/End: Original strand, 12801374 - 12801553
Alignment:
| Q |
220 |
aaccaatttgagcagctttttgaagcaatgcagttgccgacatatgtggcgaagacaacatgttctcttgttg---catggatgaattaccaaagagtga |
316 |
Q |
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| T |
12801374 |
aaccaatttgagcagctttttgaagcaatgcagttgccgacatgtgtggcgaagacaacatgttctcttgttgttgcattgatgaattaccaaagagtga |
12801473 |
T |
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| Q |
317 |
agaaaaaccatcatgttgttaatgatgatgagatgaacctatgttggtgaattgatcctgcattgtgttgttaccattgg |
396 |
Q |
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| T |
12801474 |
agaaaaaccttcatgatgttgatgatgatgagattcacttatgttgttgaattgatcatgcattgtgttgttaccattgg |
12801553 |
T |
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