View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14859_low_1 (Length: 502)
Name: NF14859_low_1
Description: NF14859
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14859_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 482; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 5 - 498
Target Start/End: Original strand, 1461748 - 1462241
Alignment:
| Q |
5 |
aacgaattcccttgttttatttttgcttgtattgtatgatttgtgtaaacaggaagtacctgagagaacaaaagatagtcctggtgcaccatggcaattt |
104 |
Q |
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| T |
1461748 |
aacgaattcccttgttttatttttgcttgtattgtatgatttgtgtaaacaggaagtacctgagagaacaaaagatagtcctggtgcaccatggcaattt |
1461847 |
T |
|
| Q |
105 |
gttggtttgttaccattgtttgatcctcctagacatgatagtgctgaaacgattagaagagctcttgaacttggtgtgaatgtcaagatgattactggta |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1461848 |
gttggtttgttaccattgtttgatcctcctagacatgatagtgctgaaacgattagaagagctcttgaacttggtgtgaatgtcaagatgattactggta |
1461947 |
T |
|
| Q |
205 |
aaacacgagaccatactttactatattacgttgttctaaattgcagtgtgtaactgcaattgtgattgcaatataaagttttagaggtctccacaaacgt |
304 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1461948 |
aaacacgagaccatactttactatattacattgttctaaattgcagtttgtaactgcaattgtgattgcaatataaagttttagaggtctccacaaacgt |
1462047 |
T |
|
| Q |
305 |
aattcagcgaaaatgtaaccggggccaccaactttaatttagaaccatttgtagctcataccatagatcaaagtttatagctttgaagtttgaaattaat |
404 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1462048 |
aattcagcgaaaatgtaactggggccaccaactttaatttagaaccatttgtagctcataccatagatcaaagtttatagctttgaagtttgaaattaat |
1462147 |
T |
|
| Q |
405 |
cgcggattctgtttttctctaggggatcagctggccattggtaaagaaacaggtagaaggcttggaatgggaacaaatatgtatccatcatctg |
498 |
Q |
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| T |
1462148 |
cgcggattctgtttttctctaggggatcagctggccattggtaaagaaacaggtagaaggcttggaatgggaacaaatatgtatccatcatctg |
1462241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 16 - 205
Target Start/End: Complemental strand, 1497621 - 1497433
Alignment:
| Q |
16 |
ttgttttatttttgcttgtattgtatgatttgtgtaaacaggaagtacctgagagaacaaaagatagtcctggtgcaccatggcaatttgttggtttgtt |
115 |
Q |
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||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||||| ||| || | |
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| T |
1497621 |
ttgttttataattgcttgtattgtatgatttgtgtaa-caggaggtacctgagagaacaaaagatagtcctggtggaccatggcaatttgtcggtctgct |
1497523 |
T |
|
| Q |
116 |
accattgtttgatcctcctagacatgatagtgctgaaacgattagaagagctcttgaacttggtgtgaatgtcaagatgattactggtaa |
205 |
Q |
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||| |||||||||||||| || ||||||||||||||||| ||||||||||| ||| | |||||||||||||| ||||||||||||||||| |
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| T |
1497522 |
accgttgtttgatcctccaaggcatgatagtgctgaaacaattagaagagcacttaaccttggtgtgaatgttaagatgattactggtaa |
1497433 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 54 - 205
Target Start/End: Original strand, 28626521 - 28626672
Alignment:
| Q |
54 |
caggaagtacctgagagaacaaaagatagtcctggtgcaccatggcaatttgttggtttgttaccattgtttgatcctcctagacatgatagtgctgaaa |
153 |
Q |
| |
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|||||||| ||||||| ||| ||||| || |||||||| || ||||| |||||||||||||| || ||| ||| || ||||| ||||| |||||||||| |
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| T |
28626521 |
caggaagttcctgagaaaactaaagaaagccctggtgctccttggcagtttgttggtttgttgtcactgtctgacccacctaggcatgacagtgctgaaa |
28626620 |
T |
|
| Q |
154 |
cgattagaagagctcttgaacttggtgtgaatgtcaagatgattactggtaa |
205 |
Q |
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| ||| | ||||||||| | |||||||| ||||| ||||||||||||||||| |
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|
| T |
28626621 |
ctattcggagagctcttcatcttggtgtcaatgttaagatgattactggtaa |
28626672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 412 - 498
Target Start/End: Complemental strand, 1497358 - 1497272
Alignment:
| Q |
412 |
tctgtttttctctaggggatcagctggccattggtaaagaaacaggtagaaggcttggaatgggaacaaatatgtatccatcatctg |
498 |
Q |
| |
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|||||| ||| |||||||||||||| |||||||| || ||||| |||||||||||||||||||||||||| ||||||||||| |||| |
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| T |
1497358 |
tctgttgttcactaggggatcagcttgccattggaaaggaaactggtagaaggcttggaatgggaacaaacatgtatccatcgtctg |
1497272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 167; Significance: 3e-89; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 5 - 300
Target Start/End: Original strand, 26789236 - 26789534
Alignment:
| Q |
5 |
aacgaattcccttgttttatttttgcttgtattgtatgatttgtgtaaacaggaagtacctgagagaacaaaagatagtcctggtgcaccatggcaattt |
104 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
26789236 |
aacgaattcccttgttttattttttcttgtattgtatgatttgtgtaa-caggaagtacctgagagaacaaaagatggtcctggtgcaccatggcaattt |
26789334 |
T |
|
| Q |
105 |
gttggtttgttaccattgtttgatcctcctagacatgatagtgctgaaacgattagaagagctcttgaacttggtgtgaatgtcaagatgattactggta |
204 |
Q |
| |
|
||||||||||||||| | |||||||||||||| ||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
26789335 |
gttggtttgttaccactatttgatcctcctaggcatgatagtgctgaaactattaaaagagctctcgaacttggtgtgaatgtcaagatgattactggta |
26789434 |
T |
|
| Q |
205 |
aaacacgagaccatactttactatatt----acgttgttctaaattgcagtgtgtaactgcaattgtgattgcaatataaagttttagaggtctccacaa |
300 |
Q |
| |
|
| | | || | | || |||| | | || || | |||||||||| |||| |||||||||| || |||||||| |||||||||||| ||||| |||||| |
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| T |
26789435 |
agatatgatatcgtattttattgttttacacacatagttctaaatttcagtttgtaactgcagttttgattgcagtataaagttttaaaggtcaccacaa |
26789534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 340 - 498
Target Start/End: Original strand, 26789625 - 26789783
Alignment:
| Q |
340 |
aatttagaaccatttgtagctcataccatagatcaaagtttatagctttgaagtttgaaattaatcgcggattctgtttttctctaggggatcagctggc |
439 |
Q |
| |
|
|||||||||||||||||||||||| ||||| |||||||||| ||||| |||||||||| |||||||||||||||||||||| |||||| ||||||||||| |
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| T |
26789625 |
aatttagaaccatttgtagctcattccataaatcaaagtttgtagctctgaagtttgagattaatcgcggattctgtttttgtctaggtgatcagctggc |
26789724 |
T |
|
| Q |
440 |
cattggtaaagaaacaggtagaaggcttggaatgggaacaaatatgtatccatcatctg |
498 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |
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|
| T |
26789725 |
catcggtaaagaaacaggtagaaggcttggaatgggcacaaacatgtatccatcatctg |
26789783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 84; Significance: 1e-39; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 58 - 205
Target Start/End: Original strand, 15868380 - 15868527
Alignment:
| Q |
58 |
aagtacctgagagaacaaaagatagtcctggtgcaccatggcaatttgttggtttgttaccattgtttgatcctcctagacatgatagtgctgaaacgat |
157 |
Q |
| |
|
|||| ||||||| ||||||||| ||| ||||||| ||||||||||||||||||||||| || |||||||||||||||| ||||| ||||||||||| || |
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| T |
15868380 |
aagttcctgagaaaacaaaagaaagtgctggtgctccatggcaatttgttggtttgttgtcagtgtttgatcctcctaggcatgacagtgctgaaaccat |
15868479 |
T |
|
| Q |
158 |
tagaagagctcttgaacttggtgtgaatgtcaagatgattactggtaa |
205 |
Q |
| |
|
||||||||||||| | |||||||| ||||| ||||||||||| ||||| |
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|
| T |
15868480 |
tagaagagctcttaatcttggtgtaaatgttaagatgattacaggtaa |
15868527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 82; Significance: 2e-38; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 52 - 205
Target Start/End: Original strand, 50275602 - 50275755
Alignment:
| Q |
52 |
aacaggaagtacctgagagaacaaaagatagtcctggtgcaccatggcaatttgttggtttgttaccattgtttgatcctcctagacatgatagtgctga |
151 |
Q |
| |
|
|||||||| ||||||||| | |||||||| ||||||||||||||||||||||||||| ||||||| | |||||||||||||| |||||||||||||| |
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|
| T |
50275602 |
aacaggaaatacctgagaaagataaagatagccctggtgcaccatggcaatttgttggtctgttacctctatttgatcctcctaggcatgatagtgctga |
50275701 |
T |
|
| Q |
152 |
aacgattagaagagctcttgaacttggtgtgaatgtcaagatgattactggtaa |
205 |
Q |
| |
|
||| || | ||||||||| | |||||||||||||| ||||||||||||||||| |
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|
| T |
50275702 |
aaccatcacaagagctctgaaccttggtgtgaatgttaagatgattactggtaa |
50275755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 419 - 493
Target Start/End: Original strand, 50275837 - 50275911
Alignment:
| Q |
419 |
ttctctaggggatcagctggccattggtaaagaaacaggtagaaggcttggaatgggaacaaatatgtatccatc |
493 |
Q |
| |
|
||||||||| |||||||| ||||||| || ||||| || ||||||||||||||||||| || ||||||||||| |
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|
| T |
50275837 |
ttctctaggtgatcagcttgccattgccaaggaaactggccgaaggcttggaatgggaacgaacatgtatccatc |
50275911 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 64; Significance: 9e-28; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 54 - 205
Target Start/End: Complemental strand, 53076139 - 53075988
Alignment:
| Q |
54 |
caggaagtacctgagagaacaaaagatagtcctggtgcaccatggcaatttgttggtttgttaccattgtttgatcctcctagacatgatagtgctgaaa |
153 |
Q |
| |
|
|||||||| ||||||| ||| ||||| || |||||||| || ||||| |||||||||||||| || ||||||| || ||||| ||||| |||||||||| |
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| T |
53076139 |
caggaagttcctgagaaaactaaagaaagccctggtgctccttggcagtttgttggtttgttgtcactgtttgacccacctaggcatgacagtgctgaaa |
53076040 |
T |
|
| Q |
154 |
cgattagaagagctcttgaacttggtgtgaatgtcaagatgattactggtaa |
205 |
Q |
| |
|
| ||| | ||||||||| | |||||||| ||||| ||||||||||||||||| |
|
|
| T |
53076039 |
ctattcggagagctcttcatcttggtgtcaatgttaagatgattactggtaa |
53075988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 123 - 203
Target Start/End: Complemental strand, 48437417 - 48437337
Alignment:
| Q |
123 |
tttgatcctcctagacatgatagtgctgaaacgattagaagagctcttgaacttggtgtgaatgtcaagatgattactggt |
203 |
Q |
| |
|
||||| ||||| || |||||||||||||| || ||| || | |||||||| |||||||| ||||| |||||||| |||||| |
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| T |
48437417 |
tttgaccctccaaggcatgatagtgctgagaccattcgacgtgctcttgaccttggtgttaatgttaagatgatcactggt |
48437337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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