View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1485_high_13 (Length: 278)
Name: NF1485_high_13
Description: NF1485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1485_high_13 |
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Alignment Details
Target: chr2 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 19 - 270
Target Start/End: Complemental strand, 42687424 - 42687173
Alignment:
| Q |
19 |
agtatcacactataacatcactttgttacgtttgttactaaaaattgaactaacctttccttgttggatatcgacctgtccttcccctgcgagggtaagg |
118 |
Q |
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| T |
42687424 |
agtatcacactataacatcactttgttacgtttgttactaaaaattgaactaacctttccttgttggatatcgacctgtccttcccctgcgagggtaagg |
42687325 |
T |
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| Q |
119 |
atgtgtgctagaccctccaagaacagggcgagcaagactttcaccgtgatctggatttcctaaatcattgtagacatcgtaatcgtagatcctttcatgt |
218 |
Q |
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| T |
42687324 |
atgtgtgctagaccctccaagaacagggcgagcaaaactttcaccgtgatctggattgcctaaatcattgtagacatcgtaatcgtagatcctttcatgt |
42687225 |
T |
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| Q |
219 |
aacttgcgctctcctgttccatctccccttaaattttgcaattcttcttctc |
270 |
Q |
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| T |
42687224 |
aacttgcgctctcctgttccatctccccttaaattttgcaattcttcttctc |
42687173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 99 - 270
Target Start/End: Original strand, 42694313 - 42694484
Alignment:
| Q |
99 |
cttcccctgcgagggtaaggatgtgtgctagaccctccaagaacagggcgagcaagactttcaccgtgatctggatttcctaaatcattgtagacatcgt |
198 |
Q |
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| T |
42694313 |
cttccccgacgaggataaggatatgtgtcagacccgccaagaacaggacgagcatgattgtcacctttctccggatttcctaaatcattgtagacatcat |
42694412 |
T |
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| Q |
199 |
aatcgtagatcctttcatgtaacttgcgctctcctgttccatctccccttaaattttgcaattcttcttctc |
270 |
Q |
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| T |
42694413 |
aatcatagattctttcccattctttgcgttctcctgttccatctcctcttaaattgttcaattcttcttctc |
42694484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 177 - 267
Target Start/End: Original strand, 6290507 - 6290597
Alignment:
| Q |
177 |
cctaaatcattgtagacatcgtaatcgtagatcctttcatgtaacttgcgctctcctgttccatctccccttaaattttgcaattcttctt |
267 |
Q |
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| T |
6290507 |
cctaaatcattgtagacatcgtaatcatatattctttcccattccttgcgctctcctgttccatctcctcttaaagtcttcaattcttctt |
6290597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 180 - 251
Target Start/End: Original strand, 6425292 - 6425363
Alignment:
| Q |
180 |
aaatcattgtagacatcgtaatcgtagatcctttcatgtaacttgcgctctcctgttccatctccccttaaa |
251 |
Q |
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| T |
6425292 |
aaatcattgtagacatcgtaatcatagatcctttcccattccttgcgctctccttttccatctcctcttaaa |
6425363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 180 - 267
Target Start/End: Original strand, 6353602 - 6353689
Alignment:
| Q |
180 |
aaatcattgtagacatcgtaatcgtagatcctttcatgtaacttgcgctctcctgttccatctccccttaaattttgcaattcttctt |
267 |
Q |
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| T |
6353602 |
aaatcattgtagacatcgtaatcatatattctttcccattccttgcgctctccagttccatctcctcttaaagtcttcaattcttctt |
6353689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 103 - 154
Target Start/End: Complemental strand, 9603247 - 9603196
Alignment:
| Q |
103 |
ccctgcgagggtaaggatgtgtgctagaccctccaagaacagggcgagcaag |
154 |
Q |
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|||| |||||||||||||| ||||||||||||||||| || || |||||||| |
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| T |
9603247 |
cccttcgagggtaaggatgagtgctagaccctccaaggaccggacgagcaag |
9603196 |
T |
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