View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1485_high_16 (Length: 249)
Name: NF1485_high_16
Description: NF1485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1485_high_16 |
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Alignment Details
Target: chr7 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 39936942 - 39937178
Alignment:
| Q |
1 |
atgccaacggttggaatgggaatggggatgggtatggaaatgggaataaacagaccagtaatgccatttcccaatatgttatccggttctgctttgcctg |
100 |
Q |
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| T |
39936942 |
atgccaacggttggaatgggaatggggatgggtatggaaatgggaataaacagaccagtaatgccatttcccaatatgttatccggttctgctttgcctg |
39937041 |
T |
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| Q |
101 |
cagccgcgaatttgggaccaaggttcgcgatgcctcctttccatatgccgcatgttccaacacctggttcatccagaatgcaagcagcaaatcaggtaga |
200 |
Q |
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| T |
39937042 |
cagccgcaaatttgggaccaaggttcgcgatgcctcctttccatatgccgcatgttccaacacctggttcatccagaatgcaagcagcaaatcaggtaga |
39937141 |
T |
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| Q |
201 |
taataatgtgatcacctcagctggaacacatgattca |
237 |
Q |
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| T |
39937142 |
taataatgtgatcacctcagctggaacacatgattca |
39937178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 115 - 194
Target Start/End: Complemental strand, 29729948 - 29729863
Alignment:
| Q |
115 |
ggaccaaggttcgcgatgcctcctttccatatgccgcatgttc------caacacctggttcatccagaatgcaagcagcaaatca |
194 |
Q |
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| T |
29729948 |
ggaccaaggttcgctatgcctcctttccatgtgccccatgttcctgcagctgcacctgattcatccagaatgcaagcagaaaatca |
29729863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 80
Target Start/End: Complemental strand, 29730050 - 29729995
Alignment:
| Q |
25 |
gggatgggtatggaaatgggaataaacagaccagtaatgccatttcccaatatgtt |
80 |
Q |
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| T |
29730050 |
gggatggaaatgggaatgggaatgaacagaccagtgatgccatttcctaatatgtt |
29729995 |
T |
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