View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1485_high_19 (Length: 247)
Name: NF1485_high_19
Description: NF1485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1485_high_19 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 144; Significance: 8e-76; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 46 - 231
Target Start/End: Complemental strand, 8173341 - 8173150
Alignment:
| Q |
46 |
ttaatggtcaacttctcatgtgcgttgttcaaataagcataatctataaa-taatcactttaaatacatatatgatgccacatatcacttagatgagaaa |
144 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||| ||| | ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8173341 |
ttaatggtcaacttctcatgtgcgttgttcaaataagcataatctaaaaaataacccctttaaatacatatatgatgccacatatcacttagatgagaaa |
8173242 |
T |
|
| Q |
145 |
tcaaaatattgtcgctcattgttcaaatattttttctcaatctattctcacacttctatttg-----tttgttatggcatcatgagcctcaa |
231 |
Q |
| |
|
|||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
8173241 |
tcaaaatattatcgctcatcgttcaaatattttttctcaatctattctcacacttctatttgtttaatttgttatggcatcatgagcctcaa |
8173150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 8174763 - 8174717
Alignment:
| Q |
1 |
aaagttgtctagttaggagtgaattttgttaagtgctttgcttattt |
47 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
8174763 |
aaagttgtctatttaggagtgaattttgttaagtgctttgcttattt |
8174717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 104
Target Start/End: Original strand, 48775276 - 48775334
Alignment:
| Q |
46 |
ttaatggtcaacttctcatgtgcgttgttcaaataagcataatctataaataatcactt |
104 |
Q |
| |
|
||||||||||||||||| | || ||||||| ||||||| |||||| |||||||||||| |
|
|
| T |
48775276 |
ttaatggtcaacttctcgtttgtgttgttcgaataagctgaatctaaaaataatcactt |
48775334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 53 - 105
Target Start/End: Original strand, 30534543 - 30534595
Alignment:
| Q |
53 |
tcaacttctcatgtgcgttgttcaaataagcataatctataaataatcacttt |
105 |
Q |
| |
|
|||||||||||| |||||| ||||||||||||||||||| ||||||||||||| |
|
|
| T |
30534543 |
tcaacttctcatttgcgttattcaaataagcataatctaaaaataatcacttt |
30534595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University