View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1485_high_5 (Length: 411)
Name: NF1485_high_5
Description: NF1485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1485_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 351; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 1 - 393
Target Start/End: Complemental strand, 10879962 - 10879573
Alignment:
| Q |
1 |
tcttacccacaccacctggcccatgcactccaatcattctcactgtagaatcttctagtttttctattatgcttttaattgtatcttttctggaaggaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| ||| |
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| T |
10879962 |
tcttacccacaccacctggcccatgcactccaatcattctcactgtagaatcttctagtttttccattatgcttttaattgtatcttttctagaagcaaa |
10879863 |
T |
|
| Q |
101 |
ttctacatagccatcattaaacaaatcagcatgcatagatgttggcttttgctgataggaaactccatcaaacttcgactcgtctattaatgacttgaca |
200 |
Q |
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||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |
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| T |
10879862 |
ttctacatagccatcattaaacaaagcaacatgcatagatgttggcttttgctgataggaaactccatcaaacttc---tcgtctattaataacttgaca |
10879766 |
T |
|
| Q |
201 |
tccactgccatcttctttgcttttctccctagtctatgtctgttcctcaagtaatgaaataaaccactggaaaaccttgtcttggcatggcctttatcat |
300 |
Q |
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| T |
10879765 |
tccactgccatcttctttgcttttctccctagtctatgtctgttcctcaagtaatgaaataaaccactggaaaaccttgtcttcgcatggcctttatcat |
10879666 |
T |
|
| Q |
301 |
cttgaaacttctccgtttcagttctagttttatccactttctgaagccaagttgcaacattactttcggttattcctagattatcctcagctt |
393 |
Q |
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| T |
10879665 |
cttgaaacttctccgtttcagttctagttttatccactttctgaagccaagttgcaacattactttcggttattcctagattatcctcagctt |
10879573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 396
Target Start/End: Complemental strand, 10848569 - 10848174
Alignment:
| Q |
1 |
tcttacccacaccacctggcccatgcactccaatcattctcactgtagaatcttctagtttttctattatgcttttaattgtatcttttctggaaggaaa |
100 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |||| |||||| | |||| ||| ||| |
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| T |
10848569 |
tcttacccacaccacctggcccatgcactccaatcattctcgctgtagaatcttctagtttttccattatcctttcaattgtgcatgttctagaaccaaa |
10848470 |
T |
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| Q |
101 |
ttctacatagccatcattaaacaaatcagcatgcatagatgttggcttttgctgataggaaactccatcaaacttcgactcgtctattaatgacttgaca |
200 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
10848469 |
ttctacatagccatcattaaacaaagcagcatgcatagatgttggcttttgctgataggaaactccatcaaacttcgactcgtctattaataacttgaca |
10848370 |
T |
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| Q |
201 |
tccactgccatcttctttgcttttctccctagtctatgtctgttcctcaagtaatgaaataaaccactggaaaaccttgtcttggcatggcctttatcat |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | ||||||| ||||| |
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| T |
10848369 |
tccactgccatcttctttgcttttctccctagtctatgtctgttcctcaggtaatgaaataaaccactggaaaaccttgtcttcgtgtggccttcatcat |
10848270 |
T |
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| Q |
301 |
cttgaaacttctccgtttcagttctagttttatccactttctgaagccaagttgcaacattactttcggttattcctagattatcctcagcttcat |
396 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10848269 |
cttgaaactcctccgtttcagttctagttttatccactttctgaagccaagctgcaacattactttcggttattcctagattatcctcagcttcat |
10848174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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