View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1485_high_6 (Length: 399)
Name: NF1485_high_6
Description: NF1485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1485_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 22 - 389
Target Start/End: Complemental strand, 39738592 - 39738225
Alignment:
| Q |
22 |
gttgattcaactgataaaatctgtcaattctctatttgaatcgtaattgtaaatgaaaagagaaattagctgaaaacttggaagtgtaaaacaattcaga |
121 |
Q |
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| T |
39738592 |
gttgattcaactgagaaaatctgtcaattctctatttgaatcgtaattgtaaatgaaaagagaaattagctgaaaacttggaagtgtaaaacaattcaga |
39738493 |
T |
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| Q |
122 |
gttgtcctacaatgcagaaagactgcatgatactaacattaataattagtcatgcaattaagcataatggatttcaaaattcatgaaccatattctaaga |
221 |
Q |
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| T |
39738492 |
gttgtcctacaatgcagaaagactgcatgatactaacattaataattagtcatgcaattatgcataatggatttcaaaattcatgaaccatattctaaga |
39738393 |
T |
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| Q |
222 |
ttagcctacataattgaagccttacagtctaagaaatagtcttcaaattaggaaggaaaatttgcagtagaaaatgtgttttctgataagctaaattggt |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
39738392 |
ttagcctacataattgaagccttacagtctaagaaatagtcttcaaattaggaaggaaaattcacagtagaaaatgtgttttctgataagctaaattggt |
39738293 |
T |
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| Q |
322 |
attgaagtaaaaatgttgtggtaaaaaaggctaaccaaatacataaatcaaaatggagggattttctt |
389 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39738292 |
attgaagtaaaaatgttgtggtaaaaaaggctaaccaaatacataaatcaaaatggagggattttctt |
39738225 |
T |
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