View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1485_low_10 (Length: 356)
Name: NF1485_low_10
Description: NF1485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1485_low_10 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 328; Significance: 0; HSPs: 11)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 19 - 346
Target Start/End: Complemental strand, 39476537 - 39476210
Alignment:
| Q |
19 |
gctgggtgggctagtatttgggcctgttgggcccatccaactatccttccaatctcagcagttctatctaagaatccttcaggtaaaaccagacccaaat |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39476537 |
gctgggtgggctagtatttgggcctgttgggcccatccaactatccttccaatctcagcagttctatctaagaatccttcaggtaaaaccagacccaaat |
39476438 |
T |
|
| Q |
119 |
cataaagagggtaatccgagggtgcagccatagtgccctttgctggaggtttacgcagagaccacacgaagcgtgccccactattctcaacagcatgtgc |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39476437 |
cataaagagggtaatccgagggtgcagccatagtgccctttgctggaggtttacgcagagaccacacgaagcgtgccccactattctcaacagcatgtgc |
39476338 |
T |
|
| Q |
219 |
gatctccttaacctgatcttcatcaaaataacccctactcccgaagcagaggaaaactacggaggaaggaggttgatcatcaagccacttcattacatca |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39476337 |
gatctccttaacctgatcttcatcaaaataacccctactcccgaagcagaggaaaactacggaggaaggaggttgatcatcaagccacttcattacatca |
39476238 |
T |
|
| Q |
319 |
tcagaatcagcgtcaacagtgccctttg |
346 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
39476237 |
tcagaatcagcgtcaacagtgccctttg |
39476210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 19 - 346
Target Start/End: Complemental strand, 39484288 - 39483961
Alignment:
| Q |
19 |
gctgggtgggctagtatttgggcctgttgggcccatccaactatccttccaatctcagcagttctatctaagaatccttcaggtaaaaccagacccaaat |
118 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||| || ||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||||||| |
|
|
| T |
39484288 |
gctgggtgggctagtatttgggcttgttgggcccatctaattatccttccaatctcggcagttcgatctaagaatccttcaggtaaaaccggacccaaat |
39484189 |
T |
|
| Q |
119 |
cataaagagggtaatccgagggtgcagccatagtgccctttgctggaggtttacgcagagaccacacgaagcgtgccccactattctcaacagcatgtgc |
218 |
Q |
| |
|
||||||||| |||||| |||||||||||||| ||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
39484188 |
cataaagagagtaatcagagggtgcagccatggtgccctttactagaggtttacgcagagaccacacgaagcgtgccccactattctcaacaacatgtgc |
39484089 |
T |
|
| Q |
219 |
gatctccttaacctgatcttcatcaaaataacccctactcccgaagcagaggaaaactacggaggaaggaggttgatcatcaagccacttcattacatca |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || |||||||||||||| |||| |
|
|
| T |
39484088 |
gatctccttaacctgatcttcatcaaaataacccctactcccaaagcagaggaaaactacggaggaaggaggttgattatgaagccacttcattatatca |
39483989 |
T |
|
| Q |
319 |
tcagaatcagcgtcaacagtgccctttg |
346 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
39483988 |
tcagaatcagcgtcaacagtgccctttg |
39483961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 19 - 323
Target Start/End: Complemental strand, 39487490 - 39487186
Alignment:
| Q |
19 |
gctgggtgggctagtatttgggcctgttgggcccatccaactatccttccaatctcagcagttctatctaagaatccttcaggtaaaaccagacccaaat |
118 |
Q |
| |
|
||||| || ||||||||||||||||||||||||||||||| || |||||||||| | | |||| ||||||||||||||||||||||||| |||||| |
|
|
| T |
39487490 |
gctggatgagctagtatttgggcctgttgggcccatccaattacccttccaatccctgttgttcgatctaagaatccttcaggtaaaaccgattccaaat |
39487391 |
T |
|
| Q |
119 |
cataaagagggtaatccgagggtgcagccatagtgccctttgctggaggtttacgcagagaccacacgaagcgtgccccactattctcaacagcatgtgc |
218 |
Q |
| |
|
|| ||||||||||||| ||||||| | |||| | ||||| | || |||||||||||||||||||| || || || |||| |||||||| ||||||||| |
|
|
| T |
39487390 |
cagaaagagggtaatcagagggtgaaaccatgattcccttcggtgagggtttacgcagagaccacacaaaacgggctccacaattctcaatagcatgtgc |
39487291 |
T |
|
| Q |
219 |
gatctccttaacctgatcttcatcaaaataacccctactcccgaagcagaggaaaactacggaggaaggaggttgatcatcaagccacttcattacatca |
318 |
Q |
| |
|
||||| ||||||||||| ||||| ||| | ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| || | |||| |
|
|
| T |
39487290 |
aatctctttaacctgatcctcatcgaaagagcccctgctcccgaagcagaggaaaactaccgaggaaggaggttgatcatcaagccacttgatgatatca |
39487191 |
T |
|
| Q |
319 |
tcaga |
323 |
Q |
| |
|
||||| |
|
|
| T |
39487190 |
tcaga |
39487186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 22 - 327
Target Start/End: Original strand, 39463708 - 39464013
Alignment:
| Q |
22 |
gggtgggctagtatttgggcctgttgggcccatccaactatccttccaatctcagcagttctatctaagaatccttcaggtaaaaccagacccaaatcat |
121 |
Q |
| |
|
|||||||||||||||||||||||| | ||||| |||| | |||||||||||| |||| | || |||||||||||| |||||||| ||| |||||| |
|
|
| T |
39463708 |
gggtgggctagtatttgggcctgtggagcccaaccaatcacccttccaatctctacagtccgatataagaatccttcgggtaaaacggaacctaaatcag |
39463807 |
T |
|
| Q |
122 |
aaagagggtaatccgagggtgcagccatagtgccctttgctggaggtttacgcagagaccacacgaagcgtgccccactattctcaacagcatgtgcgat |
221 |
Q |
| |
|
||||||||||||| || || ||| ||| | |||||||| ||| |||||||| |||||||| || ||||| |||||||||||||||| |||| |||| || |
|
|
| T |
39463808 |
aaagagggtaatcagatggcgcaatcatggcgccctttggtgggggtttacgtagagaccaaacaaagcgagccccactattctcaatagcaagtgcaat |
39463907 |
T |
|
| Q |
222 |
ctccttaacctgatcttcatcaaaataacccctactcccgaagcagaggaaaactacggaggaaggaggttgatcatcaagccacttcattacatcatca |
321 |
Q |
| |
|
||||||||||||||||||||| ||| |||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||| || | ||||||| |
|
|
| T |
39463908 |
ctccttaacctgatcttcatcgaaagaacctctgctcccgaagcagaggaaaactactgaggaaggaggttgatcatcaagccacttgatgatatcatca |
39464007 |
T |
|
| Q |
322 |
gaatca |
327 |
Q |
| |
|
||||| |
|
|
| T |
39464008 |
taatca |
39464013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 19 - 305
Target Start/End: Complemental strand, 39452025 - 39451739
Alignment:
| Q |
19 |
gctgggtgggctagtatttgggcctgttgggcccatccaactatccttccaatctcagcagttctatctaagaatccttcaggtaaaaccagacccaaat |
118 |
Q |
| |
|
||||| || |||||||||||||| ||| ||||||| |||| | |||||||||||| | |||| ||||||||||||||| ||||||||| || || || |
|
|
| T |
39452025 |
gctggatgtgctagtatttgggcttgtggggcccaaccaatcacccttccaatctcttccgttcgatctaagaatccttctggtaaaaccgaacacagat |
39451926 |
T |
|
| Q |
119 |
cataaagagggtaatccgagggtgcagccatagtgccctttgctggaggtttacgcagagaccacacgaagcgtgccccactattctcaacagcatgtgc |
218 |
Q |
| |
|
|| |||||| |||||| || ||||||||||| | |||||||| || |||||||| |||||||| |||||| | |||||||||||||||| ||||||||| |
|
|
| T |
39451925 |
cagaaagagtgtaatcagaaggtgcagccatggcgccctttggtgctggtttacggagagaccatacgaagtgggccccactattctcaatagcatgtgc |
39451826 |
T |
|
| Q |
219 |
gatctccttaacctgatcttcatcaaaataacccctactcccgaagcagaggaaaactacggaggaaggaggttgatcatcaagcca |
305 |
Q |
| |
|
||||||||||||||| || ||||| ||| ||||||| ||||| |||||||||||||| || || ||| ||||||||||||||||||| |
|
|
| T |
39451825 |
gatctccttaacctggtcctcatcgaaacaacccctgctcccaaagcagaggaaaacaacagaagaaagaggttgatcatcaagcca |
39451739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 19 - 308
Target Start/End: Original strand, 39457443 - 39457732
Alignment:
| Q |
19 |
gctgggtgggctagtatttgggcctgttgggcccatccaactatccttccaatctcagcagttctatctaagaatccttcaggtaaaaccagacccaaat |
118 |
Q |
| |
|
||||||||||||||||| || | |||| |||||||||||| | |||||||||||| || || ||||||||||||||||| ||||||||| || ||||| |
|
|
| T |
39457443 |
gctgggtgggctagtatgtgcgtctgtggggcccatccaataacccttccaatctctgctgtcctatctaagaatccttctggtaaaaccgaactcaaat |
39457542 |
T |
|
| Q |
119 |
cataaagagggtaatccgagggtgcagccatagtgccctttgctggaggtttacgcagagaccacacgaagcgtgccccactattctcaacagcatgtgc |
218 |
Q |
| |
|
|| |||||| |||||| || || ||| ||| ||| |||| | ||| |||||||| ||||||||||| || || ||||| ||||||| |||||| | || |
|
|
| T |
39457543 |
cagaaagagtgtaatcagatggcgcattcatggtgtccttcggtggtggtttacgtagagaccacacaaatcggaccccagtattctctacagcaagggc |
39457642 |
T |
|
| Q |
219 |
gatctccttaacctgatcttcatcaaaataacccctactcccgaagcagaggaaaactacggaggaaggaggttgatcatcaagccactt |
308 |
Q |
| |
|
|||||||||||||||||| ||||| ||| | ||||| ||||||||||||||||||||| | ||||||||||||||||||||||||||||| |
|
|
| T |
39457643 |
gatctccttaacctgatcctcatcgaaaaaccccctgctcccgaagcagaggaaaacttccgaggaaggaggttgatcatcaagccactt |
39457732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 49 - 308
Target Start/End: Original strand, 39469938 - 39470196
Alignment:
| Q |
49 |
gcccatccaactatccttccaatctcagcagttctatctaagaatccttcaggtaaaaccagacccaaatcataaagagggtaatccgagggtgcagcca |
148 |
Q |
| |
|
|||||||||| | |||||||||||| | || ||||||||||||||||| ||||||||| || ||||||| ||||||||||||| || || ||| ||| |
|
|
| T |
39469938 |
gcccatccaataacccttccaatctcttctgtcctatctaagaatccttctggtaaaaccgaactcaaatcagaaagagggtaatcagatggcgcaacca |
39470037 |
T |
|
| Q |
149 |
tagtgccctttgctggaggtttacgcagagaccacacgaagcgtgccccactattctcaacagcatgtgcgatctccttaacctgatcttcatcaaaata |
248 |
Q |
| |
|
| |||||||| | ||| |||||||| ||||||||||| | || ||||| ||||||| |||||| |||||||| ||||||||||||| ||||| ||| | |
|
|
| T |
39470038 |
tggtgcccttaggtggtggtttacgtagagaccacacaatacggaccccagtattctctacagcaagtgcgatccccttaacctgatcctcatcgaaa-a |
39470136 |
T |
|
| Q |
249 |
acccctactcccgaagcagaggaaaactacggaggaaggaggttgatcatcaagccactt |
308 |
Q |
| |
|
| |||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
39470137 |
aaccctgctcccgaagcagaggaaaactaccgaggaaggaggctgatcatcaagccactt |
39470196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 19 - 308
Target Start/End: Complemental strand, 39473055 - 39472766
Alignment:
| Q |
19 |
gctgggtgggctagtatttgggcctgttgggcccatccaactatccttccaatctcagcagttctatctaagaatccttcaggtaaaaccagacccaaat |
118 |
Q |
| |
|
||||||||||||||||||||| | ||| ||||||||||||| | |||||||||||| || || | ||||| |||||||| |||||| |||||||| |
|
|
| T |
39473055 |
gctgggtgggctagtatttggacttgtggggcccatccaacaacccttccaatctctgctgtccgctctaaaaatccttcgggtaaacttgaacccaaat |
39472956 |
T |
|
| Q |
119 |
cataaagagggtaatccgagggtgcagccatagtgccctttgctggaggtttacgcagagaccacacgaagcgtgccccactattctcaacagcatgtgc |
218 |
Q |
| |
|
|| ||||||||||||| ||||| | ||||| ||||||| | |||||||||||| |||||||| | ||| || |||||||||||||||| ||| ||| |
|
|
| T |
39472955 |
caaaaagagggtaatcagagggcgaggccatggtgccctccggtggaggtttacgaagagaccatatgaaccgggccccactattctcaatagcgcatgc |
39472856 |
T |
|
| Q |
219 |
gatctccttaacctgatcttcatcaaaataacccctactcccgaagcagaggaaaactacggaggaaggaggttgatcatcaagccactt |
308 |
Q |
| |
|
|||| | |||||||||| || || ||| ||||| |||| |||||||||||||||||||| ||||| | ||||||||||||||||||||| |
|
|
| T |
39472855 |
aatctgcgtaacctgatcctcgtcgaaagaacccatacttccgaagcagaggaaaactactgaggatgcaggttgatcatcaagccactt |
39472766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 19 - 308
Target Start/End: Complemental strand, 39455653 - 39455363
Alignment:
| Q |
19 |
gctgggtgggctagtatttgggcctgttgggcccatccaactatccttccaatctcagcagttctatctaagaatccttcaggtaaaaccagacccaaat |
118 |
Q |
| |
|
||||| |||||||||||||||| ||| | ||||| |||| | |||||||||||| || || | ||||||||||||||| ||||||| | || ||||| |
|
|
| T |
39455653 |
gctggatgggctagtatttgggtttgtggagcccaaccaatcacccttccaatctctgccgtacgatctaagaatccttcgggtaaaatcgaacacaaat |
39455554 |
T |
|
| Q |
119 |
cataaagagggtaatccgagggtgcagccatagtgcccttt-gctggaggtttacgcagagaccacacgaagcgtgccccactattctcaacagcatgtg |
217 |
Q |
| |
|
|| |||||| |||||| || ||||||||| | | |||| || | | ||||||||| |||||||| | |||| | | | ||||||||||| |||| || |
|
|
| T |
39455553 |
cagaaagagtgtaatcagaaggtgcagccctggcgccccttcggtacaggtttacggagagaccatatgaagtgggacttactattctcaatagcacatg |
39455454 |
T |
|
| Q |
218 |
cgatctccttaacctgatcttcatcaaaataacccctactcccgaagcagaggaaaactacggaggaaggaggttgatcatcaagccactt |
308 |
Q |
| |
|
||||||||||||||||||| ||||||||| |||| | || |||||||| |||||||| ||||||||| |||||||||||||||||||||| |
|
|
| T |
39455453 |
cgatctccttaacctgatcctcatcaaaacaacctttgcttccgaagcaaaggaaaacgacggaggaaagaggttgatcatcaagccactt |
39455363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 19 - 308
Target Start/End: Complemental strand, 39461278 - 39460986
Alignment:
| Q |
19 |
gctgggtgggctagtatttgggcctgttgggcccatccaactatccttccaatctcagcagttctatctaagaatccttcaggtaaaaccagacccaaat |
118 |
Q |
| |
|
||||||||||| | |||||| | ||| | |||||||||| | |||||||||| | || || | ||||||||| ||||| |||||||||| ||||| | |
|
|
| T |
39461278 |
gctgggtgggccaatatttgagtctgcggagcccatccaatgacccttccaatccctgctgtccgatctaagaacccttcgggtaaaaccaagcccaatt |
39461179 |
T |
|
| Q |
119 |
cataaagagggtaatccgagggtgcagccatagtg---ccctttgctggaggtttacgcagagaccacacgaagcgtgccccactattctcaacagcatg |
215 |
Q |
| |
|
|| ||||| |||||| ||||||||| |||| | | ||||| | | |||||||| |||||||| | ||| | | ||||||| ||||| ||||| |
|
|
| T |
39461178 |
cagtaagagagtaatcagagggtgcaaccatggcgacacccttcggtttgggtttacgaagagaccatatgaaatggacgccactatcctcaatggcatg |
39461079 |
T |
|
| Q |
216 |
tgcgatctccttaacctgatcttcatcaaaataacccctactcccgaagcagaggaaaactacggaggaaggaggttgatcatcaagccactt |
308 |
Q |
| |
|
|||||||||||||| |||||| ||||| || ||||||| |||| |||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
39461078 |
tgcgatctccttaatctgatcctcatcgaaggtacccctagtcccaaagcagaggaaaactacggaggaaagaggttgatcatcaagccactt |
39460986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 49 - 305
Target Start/End: Original strand, 43311708 - 43311964
Alignment:
| Q |
49 |
gcccatccaactatccttccaatctcagcagttctatctaagaatccttcaggtaaaaccagacccaaatcataaagagggtaatccgagggtgcagcca |
148 |
Q |
| |
|
|||||||||| | ||||||| || ||| |||| ||||||||| |||||||||||||| |||||||| |||||| |||||| || | || ||| |
|
|
| T |
43311708 |
gcccatccaatgacccttccagtcctagctgttcgatctaagaacccttcaggtaaaactgcgaccaaatcagaaagagagtaatcagatgtctcaccca |
43311807 |
T |
|
| Q |
149 |
tagtgccctttgctggaggtttacgcagagaccacacgaagcgtgccccactattctcaacagcatgtgcgatctccttaacctgatcttcatcaaaata |
248 |
Q |
| |
|
| || ||||| | ||| ||||| ||||||||||||| |||||| ||| |||| ||||||| ||||| || |||||| ||| ||||| ||||| ||| | |
|
|
| T |
43311808 |
tggttcccttcggtgggggttttcgcagagaccacaggaagcgagcctcacttttctcaatagcatacgcaatctccctaatttgatcctcatcgaaaga |
43311907 |
T |
|
| Q |
249 |
acccctactcccgaagcagaggaaaactacggaggaaggaggttgatcatcaagcca |
305 |
Q |
| |
|
|||| | ||||| ||||| || |||||||||| ||| ||||||| ||||| ||||| |
|
|
| T |
43311908 |
acccttgctcccaaagcaaagataaactacggacgaaagaggttggtcatcgagcca |
43311964 |
T |
|
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