View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1485_low_11 (Length: 332)

Name: NF1485_low_11
Description: NF1485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1485_low_11
NF1485_low_11
[»] chr3 (3 HSPs)
chr3 (4-300)||(16456696-16456992)
chr3 (236-331)||(36086854-36086949)
chr3 (243-332)||(7404089-7404178)
[»] chr8 (5 HSPs)
chr8 (7-91)||(6404085-6404169)
chr8 (196-273)||(31367833-31367910)
chr8 (90-185)||(31367681-31367775)
chr8 (243-332)||(25640982-25641071)
chr8 (243-332)||(27813831-27813920)
[»] chr2 (3 HSPs)
chr2 (241-332)||(31481900-31481991)
chr2 (243-332)||(31332110-31332200)
chr2 (243-332)||(31338840-31338930)
[»] chr6 (1 HSPs)
chr6 (243-332)||(30824928-30825017)
[»] chr1 (2 HSPs)
chr1 (249-305)||(47694300-47694356)
chr1 (241-325)||(47799653-47799737)
[»] chr5 (1 HSPs)
chr5 (257-332)||(7413010-7413085)
[»] chr7 (2 HSPs)
chr7 (17-45)||(2931621-2931649)
chr7 (253-332)||(27137540-27137618)


Alignment Details
Target: chr3 (Bit Score: 297; Significance: 1e-167; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 4 - 300
Target Start/End: Complemental strand, 16456992 - 16456696
Alignment:
Q  4 aacaagccttttttatgaggtatcaaaactatatatgtaggttctgttctaatttccactatgaaatatgcattcaatcagactagctaagataattttt 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16456992 aacaagccttttttatgaggtatcaaaactatatatgtaggttctgttctaatttccactatgaaatatgcattcaatcagactagctaagataattttt 16456893  T
Q  104 gacaaattcagaaccccagaacaagtaataatacaacatgttgatctgaacaagcttaacttattgtgaagaatgacataaacgaatttgcacataatgt 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16456892 gacaaattcagaaccccagaacaagtaataatacaacatgttgatctgaacaagcttaacttattgtgaagaatgacataaacgaatttgcacataatgt 16456793  T
Q  204 aacatgcttaaaaacgttgatatgatccccttagtaaagaatttgcacataattgcattccaaacaaacaattccattcattttacagaatccaaac 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16456792 aacatgcttaaaaacgttgatatgatccccttagtaaagaatttgcacataattgcattccaaacaaacaattccattcattttacagaatccaaac 16456696  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 236 - 331
Target Start/End: Original strand, 36086854 - 36086949
Alignment:
Q  236 agtaaagaatttgcacataattgcattccaaacaaacaattccattcattttacagaatccaaacacctttaacaagcataggtgcaggagaatca 331  Q
    ||||||||| ||||||| |||  |||||| ||||||||||||||||  |||| ||||||||||||||||| ||| ||| || |||||| |||||||    
T  36086854 agtaaagaacttgcacacaatcacattcctaacaaacaattccattagttttgcagaatccaaacaccttaaacgagcttatgtgcagaagaatca 36086949  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 243 - 332
Target Start/End: Complemental strand, 7404178 - 7404089
Alignment:
Q  243 aatttgcacataattgcattccaaacaaacaattccattcattttacagaatccaaacacctttaacaagcataggtgcaggagaatcac 332  Q
    ||||| |||||||| ||||||| ||||||||||||  |||||||| ||||||| ||| || ||| |  ||||||| ||||||||||||||    
T  7404178 aatttacacataatcgcattccgaacaaacaattctgttcattttgcagaatcgaaaaacattttaagagcatagatgcaggagaatcac 7404089  T

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Target: chr8 (Bit Score: 69; Significance: 6e-31; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 7 - 91
Target Start/End: Original strand, 6404085 - 6404169
Alignment:
Q  7 aagccttttttatgaggtatcaaaactatatatgtaggttctgttctaatttccactatgaaatatgcattcaatcagactagct 91  Q
    ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||  ||||||||||||||||||||    
T  6404085 aagccttctttatgaggtatcaaaactatatatgtaggttttgttctaatttccactatgaaacgtgcattcaatcagactagct 6404169  T

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Target: chr8; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 196 - 273
Target Start/End: Original strand, 31367833 - 31367910
Alignment:
Q  196 cataatgtaacatgcttaaaaacgttgatatgatccccttagtaaagaatttgcacataattgcattccaaacaaaca 273  Q
    ||||||||||||||||||||||| ||||||||||||||| ||||||||||||| ||||||||||||||||||||||||    
T  31367833 cataatgtaacatgcttaaaaacattgatatgatcccctaagtaaagaatttgaacataattgcattccaaacaaaca 31367910  T

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Target: chr8; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 90 - 185
Target Start/End: Original strand, 31367681 - 31367775
Alignment:
Q  90 ctaagataatttttgacaaattcagaaccccagaacaagtaataatacaacatgttgatctgaacaagcttaacttattgtgaagaatgacataaa 185  Q
    |||||||||||||||||| ||||| ||||| | ||||||||| |||||||||||||  |||||||||||  |||||||| ||||  ||||||||||    
T  31367681 ctaagataatttttgacatattcaaaaccc-ataacaagtaacaatacaacatgtttctctgaacaagcgaaacttattatgaaatatgacataaa 31367775  T

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Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 243 - 332
Target Start/End: Original strand, 25640982 - 25641071
Alignment:
Q  243 aatttgcacataattgcattccaaacaaacaattccattcattttacagaatccaaacacctttaacaagcataggtgcaggagaatcac 332  Q
    ||||| |||||||| ||||||| ||||||||||||  |||||||| ||||||| ||| || ||| |  ||||||| ||||||||||||||    
T  25640982 aatttacacataatcgcattccgaacaaacaattctgttcattttgcagaatcgaaaaacattttaagagcatagatgcaggagaatcac 25641071  T

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Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 243 - 332
Target Start/End: Original strand, 27813831 - 27813920
Alignment:
Q  243 aatttgcacataattgcattccaaacaaacaattccattcattttacagaatccaaacacctttaacaagcataggtgcaggagaatcac 332  Q
    ||||| |||||||| ||||||  ||||||||| ||| ||| |||| ||||||| |||||| |||||  ||||||| ||||||||||||||    
T  27813831 aatttacacataatcgcattctgaacaaacaaatccgttcgttttgcagaatcgaaacacatttaaagagcatagatgcaggagaatcac 27813920  T

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Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 241 - 332
Target Start/End: Original strand, 31481900 - 31481991
Alignment:
Q  241 agaatttgcacataattgcattccaaacaaacaattccattcattttacagaatccaaacacctttaacaagcataggtgcaggagaatcac 332  Q
    ||||||| || ||||| |||||||||||||||||| |||||| |||| |||||||||||  | ||||||||||||||| |||| ||||||||    
T  31481900 agaattttcagataatcgcattccaaacaaacaatgccattcgttttgcagaatccaaatgcatttaacaagcataggggcagaagaatcac 31481991  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 243 - 332
Target Start/End: Complemental strand, 31332200 - 31332110
Alignment:
Q  243 aatttgcacataattgcattccaaacaaacaattccattcattttacagaatccaaacac-ctttaacaagcataggtgcaggagaatcac 332  Q
    ||||| |||||||| ||||||| ||||||||||||  |||||||| ||||||| ||| ||  ||| |  ||||||| ||||||||||||||    
T  31332200 aatttacacataatcgcattccgaacaaacaattctgttcattttgcagaatcgaaaaacatttttaagagcatagatgcaggagaatcac 31332110  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 243 - 332
Target Start/End: Complemental strand, 31338930 - 31338840
Alignment:
Q  243 aatttgcacataattgcattccaaacaaacaattccattcattttacagaatccaaacac-ctttaacaagcataggtgcaggagaatcac 332  Q
    ||||| |||||||| ||||||| ||||||||||||  |||||||| ||||||| ||| ||  ||| |  ||||||| ||||||||||||||    
T  31338930 aatttacacataatcgcattccgaacaaacaattctgttcattttgcagaatcgaaaaacatttttaagagcatagatgcaggagaatcac 31338840  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 243 - 332
Target Start/End: Original strand, 30824928 - 30825017
Alignment:
Q  243 aatttgcacataattgcattccaaacaaacaattccattcattttacagaatccaaacacctttaacaagcataggtgcaggagaatcac 332  Q
    ||||| |||||||| ||||||| ||||||||| ||| ||| |||| || |||| |||||| |||||  ||||||| ||||||||||||||    
T  30824928 aatttacacataatcgcattccgaacaaacaaatccgttcgttttgcaaaatcgaaacacatttaaagagcatagatgcaggagaatcac 30825017  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 305
Target Start/End: Complemental strand, 47694356 - 47694300
Alignment:
Q  249 cacataattgcattccaaacaaacaattccattcattttacagaatccaaacacctt 305  Q
    |||||||| ||||| ||||||||||||||| |||||| | ||||| |||||||||||    
T  47694356 cacataatcgcattacaaacaaacaattccgttcattgtgcagaaaccaaacacctt 47694300  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 241 - 325
Target Start/End: Complemental strand, 47799737 - 47799653
Alignment:
Q  241 agaatttgcacataattgcattccaaacaaacaattccattcattttacagaatccaaacacctttaacaagcataggtgcagga 325  Q
    |||| ||||| ||||| ||||||| |||||| | ||| |||| |||| |||||| |||| |||||||||||||| |||| |||||    
T  47799737 agaaattgcatataatcgcattccgaacaaaaacttctattcgttttgcagaattcaaagacctttaacaagcaaaggttcagga 47799653  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 257 - 332
Target Start/End: Original strand, 7413010 - 7413085
Alignment:
Q  257 tgcattccaaacaaacaattccattcattttacagaatccaaacacctttaacaagcataggtgcaggagaatcac 332  Q
    |||||||| ||||||||||||| ||| |||| ||||||  |||||| |||||  ||||||| ||| ||||||||||    
T  7413010 tgcattccgaacaaacaattccgttcgttttgcagaattgaaacacatttaaagagcatagatgctggagaatcac 7413085  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 45
Target Start/End: Complemental strand, 2931649 - 2931621
Alignment:
Q  17 tatgaggtatcaaaactatatatgtaggt 45  Q
    |||||||||||||||||||||||||||||    
T  2931649 tatgaggtatcaaaactatatatgtaggt 2931621  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 253 - 332
Target Start/End: Original strand, 27137540 - 27137618
Alignment:
Q  253 taattgcattccaaacaaac-aattccattcattttacagaatccaaacacctttaacaagcataggtgcaggagaatcac 332  Q
    |||||||| ||||||||||| |||||||||| |||| | |||| ||||||||  ||||||||||| ||||| |||||||||    
T  27137540 taattgcaatccaaacaaacaaattccattcgtttttcggaattcaaacacc-gtaacaagcata-gtgcaagagaatcac 27137618  T

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