View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1485_low_12 (Length: 327)
Name: NF1485_low_12
Description: NF1485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1485_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 7 - 286
Target Start/End: Original strand, 3005494 - 3005778
Alignment:
| Q |
7 |
aatacaacagatgatcaacgataaatgaatatatcatcaaaaacaaatcaatccacttgaatcatacataaagttggccttgctataaaataaatgagaa |
106 |
Q |
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| T |
3005494 |
aatacaacatatgatcaacgataaatgaatatatcatcaaaaataaatcaatccacttgaatcatacataaagttggccttgctataaaataaatgagaa |
3005593 |
T |
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| Q |
107 |
tattgttctttggccaatactcannnnnnnaccgatatatatttgtgaaaatctctcactataagtttgtataatttcacttgtttggggctagtctcca |
206 |
Q |
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|||||||||||||||||| |||| || ||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| |||||||| |
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| T |
3005594 |
tattgttctttggccaattctcatttttttactgatatatatttgtgaaaatgtctcactataagtttgtataatttcacctgtttggggccagtctcca |
3005693 |
T |
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| Q |
207 |
tcatgtttcaactataatttatatagatctgcacatttgttttgaaggatc-----aattaaattaactaagttgttgattttat |
286 |
Q |
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| T |
3005694 |
taatgtttcaaccataatttatatagatctgcacatttgttttaaaggatcaattaaattaaattaactaagttgttgattttat |
3005778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 7 - 275
Target Start/End: Complemental strand, 5562901 - 5562630
Alignment:
| Q |
7 |
aatacaacagatgatcaacgataaatgaatatatcatcaaaaacaaatcaatccacttgaatcatacataaagttggccttgctataaaataaatgagaa |
106 |
Q |
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||||||| |||||||||| |||||| ||||| || ||||||| |||||||| |||| |||||||||||||||||||||||||||||||||||| | || |
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| T |
5562901 |
aatacaatagatgatcaatgataaacgaatacattatcaaaa-caaatcaaa--acttaaatcatacataaagttggccttgctataaaataaattaaaa |
5562805 |
T |
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| Q |
107 |
tattgttctttggccaatactcannnnnnnac-cgatatat------atttgtgaaaatctctcactataagtttgtataatttcacttgtttggggcta |
199 |
Q |
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| T |
5562804 |
tattgatctttggccaattctcattttttttctcgatatatcacaaaatttgagttatt-tctcgctataagtttgtttaatttcacctatttggggctg |
5562706 |
T |
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| Q |
200 |
gtctccatcatgtttcaactataatttatatagatctgcacatttgttttgaaggatcaattaaattaactaagtt |
275 |
Q |
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| T |
5562705 |
gtctccataatgttttagccataatttatatagatctgcacattttttttgaaggatcaattaaattaactaagtt |
5562630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 76 - 278
Target Start/End: Complemental strand, 4641447 - 4641228
Alignment:
| Q |
76 |
aaagttggccttgctataaaataaatgagaatattgttctttggccaatactcannnnnnnac--cgatatat------atttgtgaaaatctctcacta |
167 |
Q |
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| T |
4641447 |
aaagttgtccttgctataaaataaatgagaatattgacctttggccaattctcattttttttcttcgatatattacaaaatttgtggaaatgtctcgcta |
4641348 |
T |
|
| Q |
168 |
taagtttgtataatttcacttgtttggggctagtctc---------catcatgtttcaactataatttatatagatctgcacatttgttttgaaggatca |
258 |
Q |
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| T |
4641347 |
taagtttgtataatttcacctgtttggagtcagtctcgacattctccataatgtttcaaccatattttatatagatctgcacatttgttttgaaggatca |
4641248 |
T |
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| Q |
259 |
attaaattaactaagttgtt |
278 |
Q |
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| T |
4641247 |
attaaattaactaagttgtt |
4641228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 64; Significance: 6e-28; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 15 - 117
Target Start/End: Original strand, 7853391 - 7853491
Alignment:
| Q |
15 |
agatgatcaacgataaatgaatatatcatcaaaaacaaatcaatccacttgaatcatacataaagttggccttgctataaaataaatgagaatattgttc |
114 |
Q |
| |
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|||||||||| |||||| ||||| || |||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
7853391 |
agatgatcaatgataaacgaatacattatcaaaaacaaatcaaa--acttaaatcatacataaagttggccttgctataaaataaatgagaatattgatc |
7853488 |
T |
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| Q |
115 |
ttt |
117 |
Q |
| |
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||| |
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| T |
7853489 |
ttt |
7853491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 229 - 285
Target Start/End: Original strand, 7853567 - 7853623
Alignment:
| Q |
229 |
atagatctgcacatttgttttgaaggatcaattaaattaactaagttgttgatttta |
285 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |
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| T |
7853567 |
atagatctgcacatttgttttgaaggatcaattaaattaactaaattgttggtttta |
7853623 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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