View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1485_low_15 (Length: 283)

Name: NF1485_low_15
Description: NF1485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1485_low_15
NF1485_low_15
[»] chr6 (10 HSPs)
chr6 (11-269)||(27878624-27878881)
chr6 (97-269)||(1234846-1235018)
chr6 (97-269)||(26976131-26976303)
chr6 (97-269)||(27873990-27874162)
chr6 (97-250)||(18968041-18968194)
chr6 (96-269)||(30986653-30986830)
chr6 (11-148)||(30967674-30967810)
chr6 (143-269)||(30966797-30966923)
chr6 (102-269)||(21966696-21966860)
chr6 (11-264)||(23012415-23012666)
[»] chr8 (4 HSPs)
chr8 (11-269)||(9444007-9444264)
chr8 (97-269)||(9439372-9439544)
chr8 (114-170)||(4799315-4799371)
chr8 (96-169)||(4844870-4844943)
[»] chr5 (5 HSPs)
chr5 (11-269)||(41718555-41718812)
chr5 (97-269)||(41723281-41723453)
chr5 (97-269)||(34360101-34360273)
chr5 (97-269)||(29585300-29585472)
chr5 (116-269)||(34352393-34352546)
[»] chr4 (15 HSPs)
chr4 (11-269)||(48701736-48701993)
chr4 (11-269)||(42266048-42266305)
chr4 (11-269)||(30950098-30950354)
chr4 (95-269)||(42270767-42270941)
chr4 (103-269)||(24520031-24520197)
chr4 (97-269)||(48697131-48697304)
chr4 (96-269)||(30945476-30945648)
chr4 (97-250)||(10427444-10427597)
chr4 (110-210)||(48782932-48783031)
chr4 (150-248)||(17248015-17248112)
chr4 (99-176)||(36615361-36615438)
chr4 (108-176)||(30165900-30165968)
chr4 (163-201)||(1979567-1979604)
chr4 (76-117)||(1999189-1999230)
chr4 (228-269)||(48782884-48782925)
[»] chr3 (8 HSPs)
chr3 (11-269)||(5823190-5823447)
chr3 (11-257)||(2817178-2817422)
chr3 (97-269)||(5818513-5818685)
chr3 (97-269)||(54546029-54546200)
chr3 (97-250)||(24659136-24659287)
chr3 (105-211)||(4579254-4579360)
chr3 (111-257)||(31204781-31204926)
chr3 (85-141)||(25877086-25877142)
[»] chr2 (12 HSPs)
chr2 (11-260)||(825632-825881)
chr2 (106-269)||(5198664-5198827)
chr2 (18-269)||(15603022-15603272)
chr2 (97-260)||(830288-830452)
chr2 (106-264)||(30396920-30397077)
chr2 (104-261)||(28715915-28716070)
chr2 (97-257)||(31592910-31593068)
chr2 (29-262)||(13843729-13843959)
chr2 (117-232)||(12175768-12175881)
chr2 (97-168)||(13840240-13840311)
chr2 (112-161)||(9358158-9358207)
chr2 (158-238)||(42117798-42117876)
[»] chr7 (7 HSPs)
chr7 (102-269)||(16183636-16183804)
chr7 (73-270)||(8139940-8140136)
chr7 (73-269)||(8138436-8138631)
chr7 (97-264)||(30235172-30235339)
chr7 (11-100)||(25441073-25441161)
chr7 (110-255)||(5102606-5102749)
chr7 (97-212)||(36528415-36528529)
[»] scaffold0074 (1 HSPs)
scaffold0074 (97-250)||(27226-27379)
[»] chr1 (3 HSPs)
chr1 (97-250)||(46191395-46191546)
chr1 (102-264)||(30697120-30697281)
chr1 (97-250)||(4130249-4130401)


Alignment Details
Target: chr6 (Bit Score: 243; Significance: 1e-135; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 11 - 269
Target Start/End: Original strand, 27878624 - 27878881
Alignment:
Q  11 cacagagcatactaagattttttcttaccactccactagtttatcacagcggaataacagctacgaaccaagggctctgataccactgttaggtaccaga 110  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  27878624 cacagagcatactaagatttt-tcttaccactccactagtttatcacagcggaataacagctacgaaccaggggctctgataccactgttaggtaccaga 27878722  T
Q  111 gtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaa 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27878723 gtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaa 27878822  T
Q  211 accacggggcaagagtagagaactttcactaagtggaagaaattacaggacctcactct 269  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  27878823 accacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctct 27878881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 97 - 269
Target Start/End: Complemental strand, 1235018 - 1234846
Alignment:
Q  97 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1235018 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 1234919  T
Q  197 aataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctcactct 269  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  1234918 aataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctct 1234846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 97 - 269
Target Start/End: Original strand, 26976131 - 26976303
Alignment:
Q  97 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26976131 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 26976230  T
Q  197 aataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctcactct 269  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  26976231 aataaggggaaaaaaccaaggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctct 26976303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 97 - 269
Target Start/End: Original strand, 27873990 - 27874162
Alignment:
Q  97 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 196  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27873990 tgttaggtaccagagtaacaaaatattatcacgcatctaaaataagagaagagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 27874089  T
Q  197 aataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctcactct 269  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  27874090 aataaagggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctct 27874162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 97 - 250
Target Start/End: Complemental strand, 18968194 - 18968041
Alignment:
Q  97 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 196  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||    
T  18968194 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaatacataatattttacgtggaaacccctcaaca 18968095  T
Q  197 aataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaaga 250  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  18968094 aataaggggaaaaaaccacggggcaagagtagaaaactttcactaagtggaaga 18968041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 96 - 269
Target Start/End: Complemental strand, 30986830 - 30986653
Alignment:
Q  96 ctgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaa---acccctc 192  Q
    |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |||||||||||   |||||||    
T  30986830 ctgttaggtatcagagtaacaaaatattatcacgtagctaaaataagagacgagaaaagaggaactgaacgcacaata-tttacgtggaaagtacccctc 30986732  T
Q  193 aacaaataagg--ggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctcactct 269  Q
    |||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  30986731 aacaaataaggaaaaaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattgcaggacctctctct 30986653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 11 - 148
Target Start/End: Complemental strand, 30967810 - 30967674
Alignment:
Q  11 cacagagcatactaagattttttcttaccactccactagtttatcacagcggaataacagctacgaaccaagggctctgataccactgttaggtaccaga 110  Q
    |||||||||||||||||||||| |||||||| ||||||||||||| |||||||||||||||||||||| || ||||||||||||||||||||||||||||    
T  30967810 cacagagcatactaagattttt-cttaccacaccactagtttatcgcagcggaataacagctacgaactaaaggctctgataccactgttaggtaccaga 30967712  T
Q  111 gtaacaaaatattatcacgcagctaaaataagagacga 148  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  30967711 gtaacaaaatattatcaagcagctaaaataagagacga 30967674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 143 - 269
Target Start/End: Complemental strand, 30966923 - 30966797
Alignment:
Q  143 agacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaa-aaaaccacggggcaagagtagagaactttcacta 241  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| || |||| |||||||||||||||||||||||||||||    
T  30966923 agacgagaaaagaggaactgaacacacaatattt-acgtggaaacccatcaacaaataagggaaataaaatcacggggcaagagtagagaactttcacta 30966825  T
Q  242 agtggaagaaattacaggacctcactct 269  Q
    ||||||||||||| ||| ||||| ||||    
T  30966824 agtggaagaaattgcagaacctctctct 30966797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 102 - 269
Target Start/End: Complemental strand, 21966860 - 21966696
Alignment:
Q  102 ggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataa 201  Q
    ||||||| |||||| ||| ||||||||||||||||| ||| | | ||||||||||||||| |||| | ||||||| | ||||||||||||||| ||||||    
T  21966860 ggtaccaaagtaacgaaacattatcacgcagctaaa-taacatatgagaaaagaggaactaaacataaaatattt-atgtggaaacccctcaataaataa 21966763  T
Q  202 ggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctcactct 269  Q
     |||||||| | | ||||||||||||||||||||||||||| |||||||||||| | |||||| ||||    
T  21966762 agggaaaaatc-atggggcaagagtagagaactttcactaaatggaagaaattataagacctctctct 21966696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 11 - 264
Target Start/End: Original strand, 23012415 - 23012666
Alignment:
Q  11 cacagagcatactaagattttttcttaccactccactagtttatcacagcggaataacagctacgaaccaagggctctgataccactgttaggtaccaga 110  Q
    |||| ||||||||||| ||||||||||||||| |||| |||| |    | |||| |||| |||||| |||| |||||  ||  || |||| |||| || |    
T  23012415 cacaaagcatactaag-ttttttcttaccactgcacttgtttgttgatgtggaacaacaactacgagccaatggctcaaatgacattgttgggtaacaaa 23012513  T
Q  111 gtaacaaaa-tattatcacgcagctaaaataagagacgag-aaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaa 208  Q
    |||| |||| |||||||||||| ||||||||||||||||| |||||| ||| |||||||||| || ||||||||||||| | || |||||| | ||| ||    
T  23012514 gtaaaaaaaatattatcacgcaactaaaataagagacgagaaaaagaagaattgaacacacatta-tttacgtggaaactcgtc-acaaattaaggggaa 23012611  T
Q  209 aaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctc 264  Q
    ||||||  |||||||||||||||||||||||||||||  ||||||| || ||||||    
T  23012612 aaacca-tgggcaagagtagagaactttcactaagtgagagaaatttcaagacctc 23012666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 239; Significance: 1e-132; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 11 - 269
Target Start/End: Original strand, 9444007 - 9444264
Alignment:
Q  11 cacagagcatactaagattttttcttaccactccactagtttatcacagcggaataacagctacgaaccaagggctctgataccactgttaggtaccaga 110  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  9444007 cacagagcatactaagatttt-tcttaccactccactagtttatcacagcggaataacagctacgaaccagcggctctgataccactgttaggtaccaga 9444105  T
Q  111 gtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaa 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9444106 gtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaa 9444205  T
Q  211 accacggggcaagagtagagaactttcactaagtggaagaaattacaggacctcactct 269  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  9444206 accacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctct 9444264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 97 - 269
Target Start/End: Original strand, 9439372 - 9439544
Alignment:
Q  97 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9439372 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 9439471  T
Q  197 aataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctcactct 269  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  9439472 aataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctct 9439544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 114 - 170
Target Start/End: Complemental strand, 4799371 - 4799315
Alignment:
Q  114 acaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacaca 170  Q
    ||||||||||||||| | |||||||||||||| |||||||||| || ||||||||||    
T  4799371 acaaaatattatcacactgctaaaataagagatgagaaaagagaaattgaacacaca 4799315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 169
Target Start/End: Complemental strand, 4844943 - 4844870
Alignment:
Q  96 ctgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacac 169  Q
    ||||||||||| |||| ||||||| |||||||||| |  ||||||||||  |||| |||| ||| |||||||||    
T  4844943 ctgttaggtacaagagaaacaaaacattatcacgctgtaaaaataagagttgagataagaagaattgaacacac 4844870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 11 - 269
Target Start/End: Complemental strand, 41718812 - 41718555
Alignment:
Q  11 cacagagcatactaagattttttcttaccactccactagtttatcacagcggaataacagctacgaaccaagggctctgataccactgttaggtaccaga 110  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  41718812 cacagagcatactaagattttt-cttaccactccactagtttatcacagcggaataacagctacgaaccagcggctctgataccactgttaggtaccaga 41718714  T
Q  111 gtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaa 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41718713 gtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaa 41718614  T
Q  211 accacggggcaagagtagagaactttcactaagtggaagaaattacaggacctcactct 269  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  41718613 accacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctct 41718555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 97 - 269
Target Start/End: Complemental strand, 41723453 - 41723281
Alignment:
Q  97 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41723453 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 41723354  T
Q  197 aataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctcactct 269  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  41723353 aataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctct 41723281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 97 - 269
Target Start/End: Complemental strand, 34360273 - 34360101
Alignment:
Q  97 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  34360273 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtagaaacccctcaaca 34360174  T
Q  197 aataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctcactct 269  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  34360173 aataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctct 34360101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 97 - 269
Target Start/End: Original strand, 29585300 - 29585472
Alignment:
Q  97 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 196  Q
    ||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29585300 tgttaggtatcagagtaacaaaatattatcatgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 29585399  T
Q  197 aataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctcactct 269  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  29585400 aataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctct 29585472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 116 - 269
Target Start/End: Complemental strand, 34352546 - 34352393
Alignment:
Q  116 aaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccac 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34352546 aaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccac 34352447  T
Q  216 ggggcaagagtagagaactttcactaagtggaagaaattacaggacctcactct 269  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  34352446 ggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctct 34352393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 239; Significance: 1e-132; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 11 - 269
Target Start/End: Original strand, 48701736 - 48701993
Alignment:
Q  11 cacagagcatactaagattttttcttaccactccactagtttatcacagcggaataacagctacgaaccaagggctctgataccactgttaggtaccaga 110  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  48701736 cacagagcatactaagatttt-tcttaccactccactagtttatcacagcggaataacagctacgaaccagcggctctgataccactgttaggtaccaga 48701834  T
Q  111 gtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaa 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48701835 gtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaa 48701934  T
Q  211 accacggggcaagagtagagaactttcactaagtggaagaaattacaggacctcactct 269  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  48701935 accacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctct 48701993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 11 - 269
Target Start/End: Complemental strand, 42266305 - 42266048
Alignment:
Q  11 cacagagcatactaagattttttcttaccactccactagtttatcacagcggaataacagctacgaaccaagggctctgataccactgttaggtaccaga 110  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||| |||||||    
T  42266305 cacagagcatactaagattttt-cttaccactccactagtttatcacagcggaataacagctacgaaccagcggctctgataccactgttagataccaga 42266207  T
Q  111 gtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaa 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42266206 gtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaa 42266107  T
Q  211 accacggggcaagagtagagaactttcactaagtggaagaaattacaggacctcactct 269  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  42266106 accacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctct 42266048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 11 - 269
Target Start/End: Original strand, 30950098 - 30950354
Alignment:
Q  11 cacagagcatactaagattttttcttaccactccactagtttatcacagcggaataacagctacgaaccaagggctctgataccactgttaggtaccaga 110  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  30950098 cacagagcatactaagatttt-tcttaccactccactagtttatcacagcggaataacagctacgaaccaggagctctgataccactgttaggtaccaga 30950196  T
Q  111 gtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaa 210  Q
    ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  30950197 gtaacaaaatattatcacgcagctaaaataagataagagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataa-gggaaaaa 30950295  T
Q  211 accacggggcaagagtagagaactttcactaagtggaagaaattacaggacctcactct 269  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||    
T  30950296 accacggggcaagagtagagaactttcactaagtggaagaaattacagaacctctctct 30950354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 95 - 269
Target Start/End: Complemental strand, 42270941 - 42270767
Alignment:
Q  95 actgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaa 194  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42270941 actgttagataccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaa 42270842  T
Q  195 caaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctcactct 269  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  42270841 caaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctct 42270767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 103 - 269
Target Start/End: Original strand, 24520031 - 24520197
Alignment:
Q  103 gtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataag 202  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24520031 gtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataag 24520130  T
Q  203 gggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctcactct 269  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  24520131 gggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctct 24520197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 97 - 269
Target Start/End: Original strand, 48697131 - 48697304
Alignment:
Q  97 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48697131 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagaagagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 48697230  T
Q  197 aataagggg-aaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctcactct 269  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  48697231 aataaggggaaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctct 48697304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 96 - 269
Target Start/End: Original strand, 30945476 - 30945648
Alignment:
Q  96 ctgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaac 195  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  30945476 ctgttaggtatcagagtaacaaaatattatcacgcagctaaaataagagaagagaaaagaggaactgaacacacaatattttacgtggaaacccctcaac 30945575  T
Q  196 aaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctcactct 269  Q
    |||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||    
T  30945576 aaataa-gggaaaaaatcacggggcaagagtagagaactttcactaagtggaagaaattacagaacctctctct 30945648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 97 - 250
Target Start/End: Complemental strand, 10427597 - 10427444
Alignment:
Q  97 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 196  Q
    |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  10427597 tgttaggtaccagagtaacagaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgcggaaacccctcaaca 10427498  T
Q  197 aataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaaga 250  Q
    |||||||||||||||| |||||| || |||||| ||||||||||||||||||||    
T  10427497 aataaggggaaaaaactacggggaaaaagtagataactttcactaagtggaaga 10427444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 110 - 210
Target Start/End: Complemental strand, 48783031 - 48782932
Alignment:
Q  110 agtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaa 209  Q
    |||| ||||||||||||||||   |||||||||| ||||||||| ||||||||||||||||||| ||||||||||||   |||||||||||| |||||||    
T  48783031 agtatcaaaatattatcacgcgattaaaataagaaacgagaaaacaggaactgaacacacaata-tttacgtggaaatttctcaacaaataaagggaaaa 48782933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 150 - 248
Target Start/End: Complemental strand, 17248112 - 17248015
Alignment:
Q  150 aaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaa 248  Q
    ||||||| |||| || ||||||||||| || |||||| |||| || |||||||||||||||||||| ||  ||||||| |||||||||| |||||||||    
T  17248112 aaaagagaaactaaatacacaatattt-acatggaaatcccttaataaataaggggaaaaaaccaccggataagagtatagaactttcattaagtggaa 17248015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 99 - 176
Target Start/End: Original strand, 36615361 - 36615438
Alignment:
Q  99 ttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattt 176  Q
    |||||||| ||||||| ||||||||||| | ||| |||||||||| | |||||||||| ||| ||||| ||| |||||    
T  36615361 ttaggtactagagtaataaaatattatcgcacagttaaaataagatatgagaaaagagaaaccgaacatacattattt 36615438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 176
Target Start/End: Complemental strand, 30165968 - 30165900
Alignment:
Q  108 agagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattt 176  Q
    |||||||||||||| |||||| || ||||||||||| | ||||||| | ||| |||||||| |||||||    
T  30165968 agagtaacaaaataatatcacacaactaaaataagatatgagaaaaaatgaattgaacacataatattt 30165900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 201
Target Start/End: Complemental strand, 1979604 - 1979567
Alignment:
Q  163 aacacacaatattttacgtggaaacccctcaacaaataa 201  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  1979604 aacacacaatattt-acgtggaaacccctcaacaaataa 1979567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 117
Target Start/End: Complemental strand, 1999230 - 1999189
Alignment:
Q  76 aaccaagggctctgataccactgttaggtaccagagtaacaa 117  Q
    ||||||| |||||||||||||||||||||| |||| ||||||    
T  1999230 aaccaagtgctctgataccactgttaggtatcagaataacaa 1999189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 269
Target Start/End: Complemental strand, 48782925 - 48782884
Alignment:
Q  228 gagaactttcactaagtggaagaaattacaggacctcactct 269  Q
    |||||||||||||||||||||||||||| | |||||| ||||    
T  48782925 gagaactttcactaagtggaagaaattagatgacctctctct 48782884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 11 - 269
Target Start/End: Original strand, 5823190 - 5823447
Alignment:
Q  11 cacagagcatactaagattttttcttaccactccactagtttatcacagcggaataacagctacgaaccaagggctctgataccactgttaggtaccaga 110  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  5823190 cacagagcatactaagatttt-tcttaccactccactagtttatcacagcggaataacagctacgaaccagcggctctgataccactgttaggtaccaga 5823288  T
Q  111 gtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaa 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5823289 gtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaa 5823388  T
Q  211 accacggggcaagagtagagaactttcactaagtggaagaaattacaggacctcactct 269  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  5823389 accacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctct 5823447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 11 - 257
Target Start/End: Original strand, 2817178 - 2817422
Alignment:
Q  11 cacagagcatactaagattttttcttaccactccactagtttatcacagcggaataacagctacgaaccaagggctctgataccactgttaggtaccaga 110  Q
    |||| |||||||||||||||| ||||||||| |||||||||||| || ||||||||||| ||||||||||  |||| |||||||||||||||||||||||    
T  2817178 cacatagcatactaagatttt-tcttaccacaccactagtttattactgcggaataacaactacgaaccagcggctttgataccactgttaggtaccaga 2817276  T
Q  111 gtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaa 210  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  2817277 gtaacaaaatattatcacgcagctaaaataagagaagagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataa-gggaaaaa 2817375  T
Q  211 accacggggcaagagtagagaactttcactaagtggaagaaattaca 257  Q
    ||||| ||||||||||| |||||| ||||||||||||||||||||||    
T  2817376 accacagggcaagagtaaagaactctcactaagtggaagaaattaca 2817422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 97 - 269
Target Start/End: Original strand, 5818513 - 5818685
Alignment:
Q  97 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 196  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  5818513 tgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaact 5818612  T
Q  197 aataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctcactct 269  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  5818613 aataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctct 5818685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 97 - 269
Target Start/End: Complemental strand, 54546200 - 54546029
Alignment:
Q  97 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |||||||||||||||||||    
T  54546200 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagatgagaaaagaggaactgaacatacaatattt-acgtggaaacccctcaaca 54546102  T
Q  197 aataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctcactct 269  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| ||||    
T  54546101 aataaggggaaaaaaccacggggctagagtagagaactttcactaagtggatgaaattacaggacctctctct 54546029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 97 - 250
Target Start/End: Original strand, 24659136 - 24659287
Alignment:
Q  97 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 196  Q
    |||||||||||||||||| ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  24659136 tgttaggtaccagagtaataaaatattatcacacagctaaaataagagatgagaaaagaggaactgaacacacaacattttacgtggaaacccctcaaca 24659235  T
Q  197 aataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaaga 250  Q
    ||||||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  24659236 aataaggggaaaaaaccacggggcaagagt--agaactttcactaagtggaaga 24659287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 105 - 211
Target Start/End: Complemental strand, 4579360 - 4579254
Alignment:
Q  105 accagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggg 204  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4579360 accagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggg 4579261  T
Q  205 gaaaaaa 211  Q
    |||||||    
T  4579260 gaaaaaa 4579254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 111 - 257
Target Start/End: Original strand, 31204781 - 31204926
Alignment:
Q  111 gtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaa 210  Q
    |||||||||||||| ||||||| ||||| |||||| || |||||||||||||||| |||||||||| ||||||||||||||||||||||||| |||||||    
T  31204781 gtaacaaaatattagcacgcagttaaaagaagagatga-aaaagaggaactgaactcacaatattt-acgtggaaacccctcaacaaataagaggaaaaa 31204878  T
Q  211 accacgg-ggcaagagtagagaactttcactaagtggaagaaattaca 257  Q
    | ||||| ||||| ||||||||||||||||||||||| | ||||||||    
T  31204879 atcacggaggcaatagtagagaactttcactaagtgggaaaaattaca 31204926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 85 - 141
Target Start/End: Complemental strand, 25877142 - 25877086
Alignment:
Q  85 ctctgataccactgttaggtaccagagtaacaaaatattatcacgcagctaaaataa 141  Q
    |||||||||||||||||||||||||| ||||| |||||||| ||||| |||||||||    
T  25877142 ctctgataccactgttaggtaccagaataacataatattattacgcaactaaaataa 25877086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 11 - 260
Target Start/End: Complemental strand, 825881 - 825632
Alignment:
Q  11 cacagagcatactaagattttttcttaccactccactagtttatcacagcggaataacagctacgaaccaagggctctgataccactgttaggtaccaga 110  Q
    |||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  825881 cacagagcatactaagattttt-cttaccacttcactagtttatcacagcggaataacagctacgaaccagcggctctgataccactgttaggtaccaga 825783  T
Q  111 gtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaa-aa 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||    
T  825782 gtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaaccactcaacaaataaggggaaaaa 825683  T
Q  210 aaccacggggcaagagtagagaactttcactaagtggaagaaattacagga 260  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  825682 aaccacggggcaagagtagagaactttcactaagtggaagaaattacagga 825632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 106 - 269
Target Start/End: Original strand, 5198664 - 5198827
Alignment:
Q  106 ccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataagggg 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5198664 ccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataagggg 5198763  T
Q  206 aaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctcactct 269  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  5198764 aaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctct 5198827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 18 - 269
Target Start/End: Complemental strand, 15603272 - 15603022
Alignment:
Q  18 catactaagattttttcttaccactccactagtttatcacagcggaataacagctacgaaccaagggctctgataccactgttaggtaccagagtaacaa 117  Q
    ||||||||||| ||| ||||||||||||| ||||| |  || ||||||||||  |||||||||| | |||||||| ||||||| |||   ||||||| ||    
T  15603272 catactaagatattt-cttaccactccaccagttttttgcatcggaataacaattacgaaccaatgactctgatagcactgttgggtgtgagagtaagaa 15603174  T
Q  118 aatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacgg 217  Q
    ||||||||||||||  | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15603173 aatattatcacgcaattgaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacgg 15603074  T
Q  218 ggcaagagtagagaactttcactaagtggaagaaattacaggacctcactct 269  Q
    ||||||||||||||||||||||||||| |||||||||||| |||||| ||||    
T  15603073 ggcaagagtagagaactttcactaagtagaagaaattacaagacctctctct 15603022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 97 - 260
Target Start/End: Complemental strand, 830452 - 830288
Alignment:
Q  97 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 196  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  830452 tgttaggtaccagagtaacaaaatattatcacgcagttaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 830353  T
Q  197 aataaggggaa-aaaaccacggggcaagagtagagaactttcactaagtggaagaaattacagga 260  Q
    ||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  830352 aataaggggaaaaaaaccacggggcaagagtggagaactttcactaagtggaagaaattacagga 830288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 106 - 264
Target Start/End: Original strand, 30396920 - 30397077
Alignment:
Q  106 ccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataagggg 205  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| ||| ||||||||||||||||||||||     
T  30396920 ccagagtagcaaaatattatcacgcagctaaaataagagacgagaaaagacgaactgaacacac-atatttt-cgttgaaacccctcaacaaataaggga 30397017  T
Q  206 aaaaaaccacggggcaagagtagagaac-tttcactaagtggaagaaattacaggacctc 264  Q
    |||||| ||| |||| |||||||||||| |||||||||||||||||||||||| ||||||    
T  30397018 aaaaaatcacagggcgagagtagagaacttttcactaagtggaagaaattacaagacctc 30397077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 104 - 261
Target Start/End: Complemental strand, 28716070 - 28715915
Alignment:
Q  104 taccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataagg 203  Q
    ||||||||||||||||||||||||| ||  ||||||||||||||| |||||||||| ||||||||||||| |||||||||||||||||||  ||||||||    
T  28716070 taccagagtaacaaaatattatcacacatttaaaataagagacgacaaaagaggaattgaacacacaata-tttacgtggaaacccctcattaaataagg 28715972  T
Q  204 ggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggac 261  Q
    || |||||||||  |  |||| |||||||||||||| |||||||||||||||||||||    
T  28715971 gg-aaaaaccacaagagaagaatagagaactttcacaaagtggaagaaattacaggac 28715915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 97 - 257
Target Start/End: Original strand, 31592910 - 31593068
Alignment:
Q  97 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 196  Q
    |||| |||| || ||||||| ||||||||||| ||| || ||||||||||||||||||||||||  |||| |||||| |||||||||||| | ||||| |    
T  31592910 tgttgggtatcaaagtaacataatattatcacacagatagaataagagacgagaaaagaggaacataacatacaataatttacgtggaaatctctcaata 31593009  T
Q  197 aataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattaca 257  Q
    ||||| |  ||||||||||  |  ||||||||||||||||||||||  | |||||||||||    
T  31593010 aataa-gaaaaaaaaccac-agataagagtagagaactttcactaaccgaaagaaattaca 31593068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 29 - 262
Target Start/End: Original strand, 13843729 - 13843959
Alignment:
Q  29 tttttcttaccactccactagtttatcacagcggaataacagctacgaaccaagggctctgataccactgttaggtaccagagtaacaaaatattatcac 128  Q
    |||||||||||||||||| |||||   ||||||||| |||    |||| |||| |||||| ||||||||  | | || |||||||| |||||||||||||    
T  13843729 tttttcttaccactccaccagtttgctacagcggaacaactatcacgagccaatggctctaataccacttgtggctatcagagtaataaaatattatcac 13843828  T
Q  129 gcagctaaaataagagacgagaaaagaggaac-tgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagta 227  Q
    | |  |||| ||||    ||||||| || ||  ||||||||  |||||| |||||||||||||||||||||||||| | |||||  |  ||  || ||||    
T  13843829 gtaagtaaagtaagttttgagaaaaaagaaaaatgaacaca--atattt-acgtggaaacccctcaacaaataaggag-aaaaattataggttaaaagta 13843924  T
Q  228 gagaactttcactaagtggaagaaattacaggacc 262  Q
     |||| ||||| |||||||||||||||||||||||    
T  13843925 tagaattttcattaagtggaagaaattacaggacc 13843959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 117 - 232
Target Start/End: Original strand, 12175768 - 12175881
Alignment:
Q  117 aaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacg 216  Q
    ||||||||||||||| ||||||||| ||| || |||| || || |||||||||||||||||  ||||||||  ||||| ||||||  ||||||||| |      
T  12175768 aaatattatcacgcaactaaaataaaagatgataaaaaagaaattgaacacacaatatttt-tgtggaaacatctcaataaataa-tggaaaaaacaatt 12175865  T
Q  217 gggcaagagtagagaa 232  Q
    || |||||||||||||    
T  12175866 ggacaagagtagagaa 12175881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 97 - 168
Target Start/End: Original strand, 13840240 - 13840311
Alignment:
Q  97 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacaca 168  Q
    |||| ||||||||| |||||||||||||||||| |  || ||||| ||| |||||| ||||||| |||||||    
T  13840240 tgttgggtaccagaataacaaaatattatcacgtaattataataaaagatgagaaaggaggaaccgaacaca 13840311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 161
Target Start/End: Original strand, 9358158 - 9358207
Alignment:
Q  112 taacaaaatattatcacgcagctaaaataagagacgagaaaagaggaact 161  Q
    |||| ||||||||| |||||||||||| || ||||||||||||| |||||    
T  9358158 taaccaaatattattacgcagctaaaacaacagacgagaaaagaagaact 9358207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 238
Target Start/End: Complemental strand, 42117876 - 42117798
Alignment:
Q  158 aactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttca 238  Q
    ||||||||| ||||||||| |||| |||||| |||||  |||||||||| ||||||||| | ||| |||||| ||||||||    
T  42117876 aactgaacatacaatattt-acgtagaaacctctcaattaataagggga-aaaaccacgagacaaaagtagataactttca 42117798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 153; Significance: 4e-81; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 102 - 269
Target Start/End: Original strand, 16183636 - 16183804
Alignment:
Q  102 ggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataa 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16183636 ggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataa 16183735  T
Q  202 ggggaaaaaaccacggggcaagagtagagaactttcactaagtggaaga-aattacaggacctcactct 269  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| ||||    
T  16183736 ggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagacaattacaagacctctctct 16183804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 73 - 270
Target Start/End: Original strand, 8139940 - 8140136
Alignment:
Q  73 acgaaccaagggctctgataccactgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaat 172  Q
    ||||||||| |||||| ||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |||||||||| |||||||| ||||||    
T  8139940 acgaaccaatggctctaataccactgttgggtaccagagtaacaaaatattatcacacagctaaaataagagatgagaaaagagaaactgaacgcacaat 8140039  T
Q  173 attttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctcactctt 270  Q
    | |||| ||||||||||||||||||||||||||| ||||||| |||| |||| |||| |||||||||| |||||||||||||| | |||||| |||||    
T  8140040 a-tttatgtggaaacccctcaacaaataaggggagaaaaccatggggtaagattagaaaactttcactcagtggaagaaattataagacctctctctt 8140136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 73 - 269
Target Start/End: Original strand, 8138436 - 8138631
Alignment:
Q  73 acgaaccaagggctctgataccactgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaat 172  Q
    ||||||||| |||||| ||||||||||| |||| ||||||| |||| ||||||||||||||||||||||||||||||||||||  |||| |||||||| |    
T  8138436 acgaaccaatggctctaataccactgttgggtagcagagtatcaaagtattatcacgcagctaaaataagagacgagaaaagaaaaacttaacacacagt 8138535  T
Q  173 attttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctcactct 269  Q
    |  ||| |||||||||||| |||||| ||||||| ||||||||| ||||||| ||||||||||||||||| |||||||||||||| |||||| ||||    
T  8138536 a-attatgtggaaaccccttaacaaacaaggggagaaaaccacgaggcaagattagagaactttcactaaatggaagaaattacaagacctccctct 8138631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 97 - 264
Target Start/End: Complemental strand, 30235339 - 30235172
Alignment:
Q  97 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 196  Q
    |||| |||||||||||| ||||||||||| || |||||||||||| | | ||||||||||||||||||||||||||| |||||||||||||||||||||     
T  30235339 tgttgggtaccagagtagcaaaatattattacacagctaaaataaaaaatgagaaaagaggaactgaacacacaata-tttacgtggaaacccctcaacg 30235241  T
Q  197 aataagggg-aaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctc 264  Q
    ||||||||| |||||||||||||  ||||||||| |||||||| ||| | |||||||||||||||||||    
T  30235240 aataaggggaaaaaaaccacgggataagagtagaaaactttcaataactagaagaaattacaggacctc 30235172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 11 - 100
Target Start/End: Complemental strand, 25441161 - 25441073
Alignment:
Q  11 cacagagcatactaagattttttcttaccactccactagtttatcacagcggaataacagctacgaaccaagggctctgataccactgtt 100  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| || ||| ||||||||||||||||||    
T  25441161 cacagagcatactaagattttt-cttaccactccactagtttatcacagcggaataacaactacaaatcaatggctctgataccactgtt 25441073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 110 - 255
Target Start/End: Original strand, 5102606 - 5102749
Alignment:
Q  110 agtaacaaaatattatcacgcagctaaaataagagacgagaaaa-gaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaa 208  Q
    ||||||||||||||||||| || ||||||||| ||| ||||||| |||| ||| || ||| ||||||| || || |||||| ||||||||||||||||||    
T  5102606 agtaacaaaatattatcactcaactaaaataaaagatgagaaaaagagggactaaatacataatattt-acatgaaaaccc-tcaacaaataaggggaaa 5102703  T
Q  209 aaaccacggggcaagagtagagaactttcactaagtggaagaaatta 255  Q
    || ||| || ||||||||||| |||||| ||||||||| ||||||||    
T  5102704 aa-ccatggagcaagagtagataacttttactaagtgggagaaatta 5102749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 97 - 212
Target Start/End: Original strand, 36528415 - 36528529
Alignment:
Q  97 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 196  Q
    |||| |||| |||||||||||| ||  || ||||| ||||||||||||| ||||| ||||||| ||||||||||||| |||||||||||||||||| ||     
T  36528415 tgttgggtatcagagtaacaaagtaaaattacgcaactaaaataagagatgagaatagaggaattgaacacacaata-tttacgtggaaacccctccacg 36528513  T
Q  197 aataaggggaaaaaac 212  Q
    |||||||  |||||||    
T  36528514 aataaggaaaaaaaac 36528529  T

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Target: scaffold0074 (Bit Score: 146; Significance: 6e-77; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 97 - 250
Target Start/End: Original strand, 27226 - 27379
Alignment:
Q  97 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 196  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||    
T  27226 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagagaaactgaacacacaatactttacgtggaaacccctcaaca 27325  T
Q  197 aataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaaga 250  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27326 aataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaaga 27379  T

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Target: chr1 (Bit Score: 131; Significance: 5e-68; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 97 - 250
Target Start/End: Complemental strand, 46191546 - 46191395
Alignment:
Q  97 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 196  Q
    ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  46191546 tgttaggaaccagagtaacaaaatattatcatgcagctaaaataagagacgagaaaagaggaactgaacaca--atattttacgtggaaacccctcaaca 46191449  T
Q  197 aataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaaga 250  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  46191448 aataaggggaaaaaaccacgggacaagagtagagaactttcactaagtggaaga 46191395  T

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Target: chr1; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 102 - 264
Target Start/End: Original strand, 30697120 - 30697281
Alignment:
Q  102 ggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataa 201  Q
    ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| ||||||| ||||||||||||||||||||||||    
T  30697120 ggtactagagtaacaaaatattatcacgcagctaacataagagacgagaaaagaggaacttaacacaaaatattt-acgtggaaacccctcaacaaataa 30697218  T
Q  202 ggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctc 264  Q
    ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| ||||||    
T  30697219 ggggaaaaagccacgtggcaagagtagagaactttcactaagtggaagaaattacaagacctc 30697281  T

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Target: chr1; HSP #3
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 97 - 250
Target Start/End: Complemental strand, 4130401 - 4130249
Alignment:
Q  97 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 196  Q
    ||||||||||  ||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| |||| ||||||||| |||||||||    
T  4130401 tgttaggtacttgagtaacaaaatattatcacgcaactaaaataagtgacgagaaaagaggaactgaacacacaaaattt-acgtggaaatccctcaaca 4130303  T
Q  197 aataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaaga 250  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  4130302 aataaagggaaaaaaccacggggcaagagtagagaactttcactaagtggaaga 4130249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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