View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1485_low_16 (Length: 282)
Name: NF1485_low_16
Description: NF1485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1485_low_16 |
 | |
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Alignment Details
Target: chr6 (Bit Score: 245; Significance: 1e-136; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 2619736 - 2620004
Alignment:
| Q |
1 |
tcagacgtgtcggtgctacaaagttgttaattatatattttttcttatgtggcagggctttaggagctggtttatcaaatgtgaagtacttctcagaggc |
100 |
Q |
| |
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||||| |||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
2619736 |
tcagaagtgtcgatgctacaaagttgttaattatatattttttcctatgtggcagggctttaggagctggtctatcaaatgtgaagtacttctcagaggc |
2619835 |
T |
|
| Q |
101 |
aagtgttgcaggagaaagaataatggaaatgataaaaagagttccaaaaatagattctaaaaacatggaaggtgaaattctagagaaagtgtcagggaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2619836 |
aagtgttgcaggagaaagaataatggaaatgataaatagagttccaaaaatagattctaaaaacatggaaggtgaaattctagagaaagtgtcagggaaa |
2619935 |
T |
|
| Q |
201 |
gttgaattcaaccatgttgaatttgtgtatccatcaagacaagaaagtgtggtcctaaatgatttttgt |
269 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
2619936 |
gttgaattcaaccatgttgaatttgtgtatccatcaagaccagaaagtgtggtcctaaatgatttttgt |
2620004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 8 - 269
Target Start/End: Complemental strand, 2677842 - 2677580
Alignment:
| Q |
8 |
tgtcggtgctacaaagttgttaattatata-ttttttcttatgtggcagggctttaggagctggtttatcaaatgtgaagtacttctcagaggcaagtgt |
106 |
Q |
| |
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||||| ||||| | |||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
2677842 |
tgtcgttgctaaatagttgttaattatataattttttcttatgtggtagggctttaggagctggtttatcaaatgtgaagtacttctcagaagcaagtgt |
2677743 |
T |
|
| Q |
107 |
tgcaggagaaagaataatggaaatgataaaaagagttccaaaaatagattctaaaaacatggaaggtgaaattctagagaaagtgtcagggaaagttgaa |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||| | |||| ||||||| |
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| T |
2677742 |
tgcaggagaaagaataatggaaatgataaaaagagttccaaagatagattctgaaaacatcgaaggtgaaattctagagaaagtcttaggggaagttgag |
2677643 |
T |
|
| Q |
207 |
ttcaaccatgttgaatttgtgtatccatcaagacaagaaagtgtggtcctaaatgatttttgt |
269 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
2677642 |
ttcaaccatgttgaatttgtgtatccatcaagaccagaaagtgtggtcctaaatgatttttgt |
2677580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 1 - 268
Target Start/End: Original strand, 2586045 - 2586313
Alignment:
| Q |
1 |
tcagacgtgtcggtgctacaaagttgttaattatatat-tttttcttatgtggcagggctttaggagctggtttatcaaatgtgaagtacttctcagagg |
99 |
Q |
| |
|
||||| |||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| | |
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| T |
2586045 |
tcagaagtgtcggttctacaaagttgttgattatatatatttttcttatgtggcagggctttaggagctggtatgtcaaatgtgaagtacttctcagaag |
2586144 |
T |
|
| Q |
100 |
caagtgttgcaggagaaagaataatggaaatgataaaaagagttccaaaaatagattctaaaaacatggaaggtgaaattctagagaaagtgtcagggaa |
199 |
Q |
| |
|
|||||| ||||||||||||||||||||| ||||||||||||||||||| || ||||| |||||||||||||||||||| ||||||||||||| ||| | |
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| T |
2586145 |
caagtgcagcaggagaaagaataatggaagtgataaaaagagttccaaagattgattccgaaaacatggaaggtgaaattatagagaaagtgtcggggga |
2586244 |
T |
|
| Q |
200 |
agttgaattcaaccatgttgaatttgtgtatccatcaagacaagaaagtgtggtcctaaatgatttttg |
268 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||| || |||| |||||||| |
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|
| T |
2586245 |
agttgaattcaaccatgttgaatttgtgtatccatcaagaccagaaagtgtgatcttaaaagatttttg |
2586313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 47 - 268
Target Start/End: Original strand, 2448374 - 2448595
Alignment:
| Q |
47 |
atgtggcagggctttaggagctggtttatcaaatgtgaagtacttctcagaggcaagtgttgcaggagaaagaataatggaaatgataaaaagagttcca |
146 |
Q |
| |
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||||| ||||||| |||||| | |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2448374 |
atgtgacagggctgtaggagttagtttatcaaatgtgaagtacttctcagaagcaagtgttgcaggagaaagaataatggaaatgataaaaagagttcca |
2448473 |
T |
|
| Q |
147 |
aaaatagattctaaaaacatggaaggtgaaattctagagaaagtgtcagggaaagttgaattcaaccatgttgaatttgtgtatccatcaagacaagaaa |
246 |
Q |
| |
|
|||||||||||| |||| |||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
2448474 |
aaaatagattctgaaaatatggaaggtgaaattctagagaaagtcttgggggaagttgaattcaaccatgttgaatttgtgtatccatcaagaccagaaa |
2448573 |
T |
|
| Q |
247 |
gtgtggtcctaaatgatttttg |
268 |
Q |
| |
|
||||| || ||||||||||||| |
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| T |
2448574 |
gtgtgatcttaaatgatttttg |
2448595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 8 - 268
Target Start/End: Complemental strand, 2645403 - 2645143
Alignment:
| Q |
8 |
tgtcggtgctacaaagttgttaattatatattttttcttatgtggcagggctttaggagctggtttatcaaatgtgaagtacttctcagaggcaagtgtt |
107 |
Q |
| |
|
|||||||| || || |||||||||||||||||||| |||||||| |||| |||||||||||| ||||||||||||||||||||| ||||| |||||||| |
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|
| T |
2645403 |
tgtcggtgttataatgttgttaattatatatttttccttatgtgacaggactttaggagctgttttatcaaatgtgaagtacttttcagaagcaagtgta |
2645304 |
T |
|
| Q |
108 |
gcaggagaaagaataatggaaatgataaaaagagttccaaaaatagattctaaaaacatggaaggtgaaattctagagaaagtgtcagggaaagttgaat |
207 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||||||||||| || |||||| ||||||||||||| || |||||||||||||| | ||| ||||||||| |
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| T |
2645303 |
gcaggagaaagaataatggatgtgataaatagagttccaaagattgattctgaaaacatggaaggagagattctagagaaagttttaggagaagttgaat |
2645204 |
T |
|
| Q |
208 |
tcaaccatgttgaatttgtgtatccatcaagacaagaaagtgtggtcctaaatgatttttg |
268 |
Q |
| |
|
| ||||||||||||||||||||||||||||||| |||||||||| || ||||||||||||| |
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|
| T |
2645203 |
ttaaccatgttgaatttgtgtatccatcaagaccagaaagtgtgatcttaaatgatttttg |
2645143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 27 - 268
Target Start/End: Complemental strand, 2572986 - 2572745
Alignment:
| Q |
27 |
ttaattatatattttttcttatgtggcagggctttaggagctggtttatcaaatgtgaagtacttctcagaggcaagtgttgcaggagaaagaataatgg |
126 |
Q |
| |
|
|||| ||||||||||| ||||| | ||||||||| ||| || |||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |
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|
| T |
2572986 |
ttaactatatatttttatttatgagacagggctttcggaactagtttatcaaatgtgaagtacttctcagaagcaagtgcagcaggagaaagaataatgg |
2572887 |
T |
|
| Q |
127 |
aaatgataaaaagagttccaaaaatagattctaaaaacatggaaggtgaaattctagagaaagtgtcagggaaagttgaattcaaccatgttgaatttgt |
226 |
Q |
| |
|
|| ||||||||||||||||||| ||||||||| |||||||||||||||||||| |||||||||| | ||| ||||||| |||||||||||||||||||| |
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|
| T |
2572886 |
aagtgataaaaagagttccaaagatagattctgaaaacatggaaggtgaaattatagagaaagtcttgggggaagttgagttcaaccatgttgaatttgt |
2572787 |
T |
|
| Q |
227 |
gtatccatcaagacaagaaagtgtggtcctaaatgatttttg |
268 |
Q |
| |
|
|||||||||||||| |||||||||| || ||||||||||||| |
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|
| T |
2572786 |
gtatccatcaagaccagaaagtgtgatcttaaatgatttttg |
2572745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 27 - 259
Target Start/End: Complemental strand, 2600552 - 2600320
Alignment:
| Q |
27 |
ttaattatatattttttcttatgtggcagggctttaggagctggtttatcaaatgtgaagtacttctcagaggcaagtgttgcaggagaaagaataatgg |
126 |
Q |
| |
|
||||||| ||||||| |||||| | |||||||| ||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |
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|
| T |
2600552 |
ttaattaaatattttcccttatgagatagggctttcggagctggtttatcaaatgtgaagtacttctcagaagcaagtgcagcaggagaaagaataatgg |
2600453 |
T |
|
| Q |
127 |
aaatgataaaaagagttccaaaaatagattctaaaaacatggaaggtgaaattctagagaaagtgtcagggaaagttgaattcaaccatgttgaatttgt |
226 |
Q |
| |
|
||||||||||| | ||||||| || |||||| |||| |||||||||||||||||||||||||| | ||| ||||||| |||||| ||||||||||||| |
|
|
| T |
2600452 |
aaatgataaaacaaattccaaagattgattctgaaaatatggaaggtgaaattctagagaaagtcttgggggaagttgagttcaacaatgttgaatttgt |
2600353 |
T |
|
| Q |
227 |
gtatccatcaagacaagaaagtgtggtcctaaa |
259 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| |
|
|
| T |
2600352 |
gtatccatcaagaccagaaagtgtggtcctaaa |
2600320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 24 - 268
Target Start/End: Original strand, 2432484 - 2432728
Alignment:
| Q |
24 |
ttgttaattatatattttttcttatgtggcagggctttaggagctggtttatcaaatgtgaagtacttctcagaggcaagtgttgcaggagaaagaataa |
123 |
Q |
| |
|
|||||||||||||| | || ||||| | |||||||| ||| || |||| |||||||||| ||||||| |||| |||||||| |||||||||||||||| |
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|
| T |
2432484 |
ttgttaattatatactgttccttatattatagggcttttggaacttgtttctcaaatgtgaggtacttcgcagaagcaagtgtggcaggagaaagaataa |
2432583 |
T |
|
| Q |
124 |
tggaaatgataaaaagagttccaaaaatagattctaaaaacatggaaggtgaaattctagagaaagtgtcagggaaagttgaattcaaccatgttgaatt |
223 |
Q |
| |
|
||||| |||||||||||||||||| ||||||||| |||||||||||||||||||| |||||||||| | ||| ||||||| |||||| |||||||||| |
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|
| T |
2432584 |
tggaagtgataaaaagagttccaacgatagattctgaaaacatggaaggtgaaattatagagaaagtcttgggggaagttgagttcaacaatgttgaatt |
2432683 |
T |
|
| Q |
224 |
tgtgtatccatcaagacaagaaagtgtggtcctaaatgatttttg |
268 |
Q |
| |
|
||||||||||||||||| |||||||||| || ||||||||||||| |
|
|
| T |
2432684 |
tgtgtatccatcaagaccagaaagtgtgatcttaaatgatttttg |
2432728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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