View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1485_low_19 (Length: 258)
Name: NF1485_low_19
Description: NF1485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1485_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 9 - 209
Target Start/End: Original strand, 42980970 - 42981170
Alignment:
| Q |
9 |
atcacagaataattaaactcattatatcattatcataaggtagttgtcttgcatggtgtctgtattaacataaaagattaaagcatgaacctaacagtct |
108 |
Q |
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| T |
42980970 |
atcacagaataatcaaactcattatatcattatcataaggtagttgtcttgcatggtgtctgtattaacataaaagattaaagcatgaacctaacaatct |
42981069 |
T |
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| Q |
109 |
taccataattcccttaaaattgatagttggattattgattcctttatttctctggtaaacaatttgagccaattgaggaacataatgacctaaaaatcat |
208 |
Q |
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| T |
42981070 |
taccataattcccttaaaattgatagttggattattgattcctttatttctctggtaaacaatttgagccaattgaggaacataatgacctaaaaatcat |
42981169 |
T |
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| Q |
209 |
t |
209 |
Q |
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| T |
42981170 |
t |
42981170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 75 - 195
Target Start/End: Original strand, 42974595 - 42974715
Alignment:
| Q |
75 |
aacataaaagattaaagcatgaacctaacagtcttaccataattcccttaaaattgatagttggattattgattcctttatttctctggtaaacaatttg |
174 |
Q |
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| T |
42974595 |
aacataaaagattaaaacatgaatctaaaaagcttaccataaatccctgaaaatttataactggattactgactcccttatttctctggttaacaatttg |
42974694 |
T |
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| Q |
175 |
agccaattgaggaacataatg |
195 |
Q |
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| T |
42974695 |
agccaactgaagaacataatg |
42974715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 226 - 258
Target Start/End: Original strand, 42981186 - 42981218
Alignment:
| Q |
226 |
tttattcatttgtcattacagaaagaatttaat |
258 |
Q |
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| T |
42981186 |
tttattcatttgtcattacagaaagcatttaat |
42981218 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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