View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1485_low_21 (Length: 252)
Name: NF1485_low_21
Description: NF1485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1485_low_21 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 234; Significance: 1e-129; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 11 - 252
Target Start/End: Complemental strand, 31605638 - 31605397
Alignment:
| Q |
11 |
cacagagacaagcaaattcaaggaaagatagttcttctatagattcgatgacaatttgtttgctggctatgattgctttcacaatatgtgttttacgtcc |
110 |
Q |
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| T |
31605638 |
cacagagacaagcaaattcaaggaaagatagttcttctatagattcgatgacaatttgtttgctggctatgattgctttcacaatatgtgttttacgtcc |
31605539 |
T |
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| Q |
111 |
cataatgttttggatgataagacaaacaccagaagggaaacaaattaaagaatcgtacatattttcggtatttttaatgttattaggctgctcgttattt |
210 |
Q |
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| T |
31605538 |
cataatgttttggatgataagacaaacaccagaagggaaacaaattaaagaatcgtacatactttcggtatttttaatgttattaggctgctcgttattt |
31605439 |
T |
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| Q |
211 |
agtgaagttattggagaacattttatgcttggtcctgtaatt |
252 |
Q |
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| T |
31605438 |
agtgaggttattggagaacattttatgcttggtcctgtaatt |
31605397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 57 - 252
Target Start/End: Complemental strand, 31595828 - 31595633
Alignment:
| Q |
57 |
gatgacaatttgtttgctggctatgattgctttcacaatatgtgttttacgtcccataatgttttggatgataagacaaacaccagaagggaaacaaatt |
156 |
Q |
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| T |
31595828 |
gatgacaatttgtttgctagctatgattgccttcacaatatgtgttctacgtcccataatgttgtggatggtaagacaaacacccgaagggcaaccaatt |
31595729 |
T |
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| Q |
157 |
aaagaatcgtacatattttcggtatttttaatgttattaggctgctcgttatttagtgaagttattggagaacattttatgcttggtcctgtaatt |
252 |
Q |
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| T |
31595728 |
aaagaatcatacgtactttcggtaattttaatgttattggggtgctcattatttatggaggttattggagaacattttacgcttgggcctgtaatt |
31595633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 112 - 252
Target Start/End: Complemental strand, 31579911 - 31579771
Alignment:
| Q |
112 |
ataatgttttggatgataagacaaacaccagaagggaaacaaattaaagaatcgtacatattttcggtatttttaatgttattaggctgctcgttattta |
211 |
Q |
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| T |
31579911 |
ataatgttttggatgataagaaaaacacctgaaggaaaaccaatcaaagaatcatacatattttcagtgtttttaatgatattgggctgctcattattta |
31579812 |
T |
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| Q |
212 |
gtgaagttattggagaacattttatgcttggtcctgtaatt |
252 |
Q |
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| T |
31579811 |
gtgaggttattggagaacattatatgattggtcctgtaatt |
31579771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 78 - 201
Target Start/End: Complemental strand, 31564411 - 31564288
Alignment:
| Q |
78 |
tatgattgctttcacaatatgtgttttacgtcccataatgttttggatgataagacaaacaccagaagggaaacaaattaaagaatcgtacatattttcg |
177 |
Q |
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| T |
31564411 |
tatggttgttttcataatatgtgttcttagacccataatgctttggatggtaagaaaaacaccagaaggaaaaccaatcaaagaatcatacataatgtct |
31564312 |
T |
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| Q |
178 |
gtatttttaatgttattaggctgc |
201 |
Q |
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| T |
31564311 |
gtgtttttaatgttactcggctgc |
31564288 |
T |
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