View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1485_low_23 (Length: 249)
Name: NF1485_low_23
Description: NF1485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1485_low_23 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 14 - 249
Target Start/End: Original strand, 24125267 - 24125502
Alignment:
| Q |
14 |
gaacatttgaaaactttcaaaataagaaaagtgaacactctcaggtggggttgacaaaaactaggtccttgtttccagagatagtctgacctagactcac |
113 |
Q |
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| T |
24125267 |
gaacatttggaaactttcaaaataagaaaagtgaacactcccgggtggggttgacaaaaactaggtccttgtttccagggatagtctgacctagactcac |
24125366 |
T |
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| Q |
114 |
cccccatcgccctactctattagctccaatataaaatcaaggccaatttccactcgtaataggtacatgatgtatgannnnnnncttcaacggaaccatt |
213 |
Q |
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| T |
24125367 |
cccccatcgccctactctattagctccaatataaaatcaaggccaatttccactcataataggtacatgatgtatgatttttttcttcaacggaaccatt |
24125466 |
T |
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| Q |
214 |
ttcagaaagaaaaacaagtggaaagttgattccaca |
249 |
Q |
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| T |
24125467 |
ttcagaaagaaaaacaagtggaaagttgattccaca |
24125502 |
T |
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Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 18 - 104
Target Start/End: Complemental strand, 45163412 - 45163326
Alignment:
| Q |
18 |
atttgaaaactttcaaaataagaaaagtgaacactctcaggtggggttgacaaaaactaggtccttgtttccagagatagtctgacc |
104 |
Q |
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| T |
45163412 |
atttgaaaactttcaaaataagtaaagtgaacactcctaggtggggttggcaagaaccaggtccttgctttcagggatagtttgacc |
45163326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 205 - 245
Target Start/End: Complemental strand, 45163287 - 45163247
Alignment:
| Q |
205 |
ggaaccattttcagaaagaaaaacaagtggaaagttgattc |
245 |
Q |
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| T |
45163287 |
ggaaccattttcagaaagaagaacaagtggaaagttgattc |
45163247 |
T |
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