View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1485_low_24 (Length: 248)

Name: NF1485_low_24
Description: NF1485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1485_low_24
NF1485_low_24
[»] chr1 (3 HSPs)
chr1 (1-230)||(42981373-42981602)
chr1 (23-132)||(42974932-42975048)
chr1 (127-191)||(43328456-43328520)
[»] chr2 (2 HSPs)
chr2 (123-194)||(41047860-41047931)
chr2 (140-189)||(33498619-33498668)
[»] chr3 (1 HSPs)
chr3 (116-191)||(7563193-7563268)
[»] chr7 (2 HSPs)
chr7 (122-172)||(12667969-12668019)
chr7 (123-188)||(21454242-21454307)
[»] chr5 (2 HSPs)
chr5 (121-166)||(19625931-19625976)
chr5 (123-167)||(27253298-27253342)
[»] chr4 (2 HSPs)
chr4 (140-189)||(25923773-25923822)
chr4 (134-191)||(43093538-43093595)
[»] chr8 (1 HSPs)
chr8 (123-167)||(25161238-25161282)


Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 42981373 - 42981602
Alignment:
Q  1 tcagctgcaaagtcaagaaactcagatctcagatacaaactaacatgtcaaatctcattgctaaaacaaaactggcactaggagtaaatccttcatgagc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42981373 tcagctgcaaagtcaagaaactcagatctcagatacaaactaacatgtcaaatctcattgctaaaacaaaactggcactaggagtaaatccttcatgagc 42981472  T
Q  101 aagaccattacaaacctatgcaacactgacacgtgtgactacattcaattattccattttttcaaatcattatatgtgtcaacgtgtcagtttcgcgtca 200  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||     
T  42981473 aagaccattacaaacctatgcaacactgacaggtgtgactacattcaattattccattttctcaaatcattatatgtgtcaacgtgtcagttttgcgtcg 42981572  T
Q  201 gtgctacatagttacaaactacattacctg 230  Q
    ||||||||||||||| ||||||||||||||    
T  42981573 gtgctacatagttactaactacattacctg 42981602  T

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Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 23 - 132
Target Start/End: Original strand, 42974932 - 42975048
Alignment:
Q  23 cagatctcagatacaaactaacatgtcaaatctcattgctaaaacaaaa-----ctggcactaggagtaaatccttcatgagcaagacca--ttacaaac 115  Q
    |||||| |||||||| | ||||| |||||||||||||||||||||||||     ||||||||  |||||||||||||||| |||| ||||  ||||||||    
T  42974932 cagatcgcagatacatattaacacgtcaaatctcattgctaaaacaaaacaaatctggcactgcgagtaaatccttcatgggcaaaaccattttacaaac 42975031  T
Q  116 ctatgcaacactgacac 132  Q
    ||||||| ||| |||||    
T  42975032 ctatgcatcaccgacac 42975048  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 191
Target Start/End: Complemental strand, 43328520 - 43328456
Alignment:
Q  127 tgacacgtgtgactacattcaattattccattttttcaaatcattatatgtgtcaacgtgtcagt 191  Q
    |||||| ||||  |||||| ||||||| |||||| |||||| |||||| ||||||||||||||||    
T  43328520 tgacacatgtggttacattaaattatttcattttctcaaattattataagtgtcaacgtgtcagt 43328456  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 123 - 194
Target Start/End: Complemental strand, 41047931 - 41047860
Alignment:
Q  123 acactgacacgtgtgactacattcaattattccattttttcaaatcattatatgtgtcaacgtgtcagtttc 194  Q
    ||||| |||| ||||  ||||||||||||||||| |||||||||| |||||  ||||| |||||||||||||    
T  41047931 acacttacacatgtgtttacattcaattattccactttttcaaattattatcagtgtcgacgtgtcagtttc 41047860  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 189
Target Start/End: Complemental strand, 33498668 - 33498619
Alignment:
Q  140 tacattcaattattccattttttcaaatcattatatgtgtcaacgtgtca 189  Q
    ||||||||||||||||||||| |||||| ||||  |||||| ||||||||    
T  33498668 tacattcaattattccattttctcaaattattacttgtgtcgacgtgtca 33498619  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 191
Target Start/End: Original strand, 7563193 - 7563268
Alignment:
Q  116 ctatgcaacactgacacgtgtgactacattcaattattccattttttcaaatcattatatgtgtcaacgtgtcagt 191  Q
    ||||| ||||| |||||||||   |||||||||||||||||| || |||||| |||||  |||||||||| |||||    
T  7563193 ctatgtaacaccgacacgtgtagatacattcaattattccatattctcaaattattattggtgtcaacgtatcagt 7563268  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 172
Target Start/End: Original strand, 12667969 - 12668019
Alignment:
Q  122 aacactgacacgtgtgactacattcaattattccattttttcaaatcatta 172  Q
    |||||| |||| ||||| ||||||||||||| |||||||||||||| ||||    
T  12667969 aacactaacacatgtgattacattcaattataccattttttcaaataatta 12668019  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 123 - 188
Target Start/End: Original strand, 21454242 - 21454307
Alignment:
Q  123 acactgacacgtgtgactacattcaattattccattttttcaaatcattatatgtgtcaacgtgtc 188  Q
    ||||||| || ||||  |||||||||| | ||||||||||||||| |||||| |||||||| ||||    
T  21454242 acactgagacatgtggttacattcaataaatccattttttcaaattattataggtgtcaacatgtc 21454307  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 121 - 166
Target Start/End: Original strand, 19625931 - 19625976
Alignment:
Q  121 caacactgacacgtgtgactacattcaattattccattttttcaaa 166  Q
    |||||||||||| ||||  ||||||||||||||||||||| |||||    
T  19625931 caacactgacacatgtggttacattcaattattccattttctcaaa 19625976  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 167
Target Start/End: Complemental strand, 27253342 - 27253298
Alignment:
Q  123 acactgacacgtgtgactacattcaattattccattttttcaaat 167  Q
    |||||||||| ||||| |||||||||||||  |||||||||||||    
T  27253342 acactgacacatgtgattacattcaattatgacattttttcaaat 27253298  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 189
Target Start/End: Original strand, 25923773 - 25923822
Alignment:
Q  140 tacattcaattattccattttttcaaatcattatatgtgtcaacgtgtca 189  Q
    |||||| |||||||| ||||| |||||| ||||| |||||||||||||||    
T  25923773 tacatttaattattcaattttgtcaaatgattatctgtgtcaacgtgtca 25923822  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 134 - 191
Target Start/End: Original strand, 43093538 - 43093595
Alignment:
Q  134 tgtgactacattcaattattccattttttcaaatcattatatgtgtcaacgtgtcagt 191  Q
    ||||| ||||||||||||| |||||||||||||| |||||  ||||  ||||||||||    
T  43093538 tgtgattacattcaattatgccattttttcaaattattatgggtgttgacgtgtcagt 43093595  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 167
Target Start/End: Complemental strand, 25161282 - 25161238
Alignment:
Q  123 acactgacacgtgtgactacattcaattattccattttttcaaat 167  Q
    |||||||||| |||||  |||||||||||| ||||||||||||||    
T  25161282 acactgacacatgtgatgacattcaattataccattttttcaaat 25161238  T

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