View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1485_low_26 (Length: 241)
Name: NF1485_low_26
Description: NF1485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1485_low_26 |
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Alignment Details
Target: chr3 (Bit Score: 136; Significance: 5e-71; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 72 - 223
Target Start/End: Complemental strand, 34620625 - 34620474
Alignment:
| Q |
72 |
tacgcatttcttgataattaaacaataccaatcgtaacattttttgcaataattaaacaaaaagggtatcaaaagaatacgtacttcttgtcaaaagaga |
171 |
Q |
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| T |
34620625 |
tacgtatttcttgataattaaacaataccaatcgtaacattctttgcaataattaaacaaaaagggtatcaaaagaatacgtatttcttgtcaaaagaga |
34620526 |
T |
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| Q |
172 |
aggaagtatttagccatactttaatcaagaaatgtatgtattgttctatttt |
223 |
Q |
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| T |
34620525 |
aagaagtatttagccatactttaatcaagaaatgtatgtattgttctatttt |
34620474 |
T |
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Target: chr1 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 93 - 189
Target Start/End: Original strand, 51054251 - 51054346
Alignment:
| Q |
93 |
acaataccaatcgtaacattttttgcaataattaaacaaaaagggtatcaaaagaatacgtacttcttgtcaaaagagaaggaagtatttagccata |
189 |
Q |
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| T |
51054251 |
acaatactaattataacattctttgcaataattaaacaaaaagggt-tcaaaagaatacgtatttcttgtcaaaagaaaaagaagtatttagccata |
51054346 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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