View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1485_low_27 (Length: 240)
Name: NF1485_low_27
Description: NF1485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1485_low_27 |
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| [»] chr6 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 30 - 240
Target Start/End: Complemental strand, 24125786 - 24125576
Alignment:
| Q |
30 |
cttacatttactctgaatgagcaaaatgatagatatataaaagacatgacttatatattgaatatctgaaggttttagacggtgatgtggtgtttccgtc |
129 |
Q |
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| T |
24125786 |
cttacatccactctgaatgagcaaaatgatagatatataaaggacatgacttatatattgaatatcttaaggttttagacggcaatgtggtgtttccgtc |
24125687 |
T |
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| Q |
130 |
tcttctggtcgccgctctcccggatctacaacaaaagtaaatggtagttttttacaatttgatataatatatgtgtcatctcttagcaaacgttattgga |
229 |
Q |
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| T |
24125686 |
tcttctggtcgccgctctcccggatctccaacaaaaataaatggtagttttttacaatttgatataatttatgtgtcatctcttagcaaacgttattgga |
24125587 |
T |
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| Q |
230 |
tagactttcca |
240 |
Q |
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| T |
24125586 |
tatactttcca |
24125576 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 29 - 240
Target Start/End: Original strand, 45162047 - 45162249
Alignment:
| Q |
29 |
tcttacatttactctgaatgagca-aaatgatagatatataaaagacatgacttatatattgaatatctgaaggttttagacggtgatgtggtgtttccg |
127 |
Q |
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| T |
45162047 |
tcttacatatactctcaatgagcttaaatggtagatatataaa-gacatgacttatatatttaatattttaagattttagatggc-----------tccg |
45162134 |
T |
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| Q |
128 |
tctcttctggtcgccgctctcccggatctacaacaaaagtaaatggtagtttttt-acaatttgat-ataatatatgtgtcatctcttagcaaacgttat |
225 |
Q |
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| T |
45162135 |
tcttttgtggttgccgctctcccagatctccaacaaaaataaattgtagtttttttactattatattaaaatttatgtgtcatctctcggaaaatgttat |
45162234 |
T |
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| Q |
226 |
tggatagactttcca |
240 |
Q |
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| T |
45162235 |
tggatagactttcca |
45162249 |
T |
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