View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1485_low_28 (Length: 238)

Name: NF1485_low_28
Description: NF1485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1485_low_28
NF1485_low_28
[»] chr1 (2 HSPs)
chr1 (19-238)||(3109861-3110080)
chr1 (182-238)||(4768810-4768866)
[»] chr3 (10 HSPs)
chr3 (177-235)||(43115084-43115142)
chr3 (150-229)||(43875468-43875545)
chr3 (177-229)||(36200124-36200176)
chr3 (181-236)||(37273166-37273221)
chr3 (188-238)||(41724251-41724301)
chr3 (182-235)||(27016433-27016486)
chr3 (177-229)||(31010430-31010482)
chr3 (179-235)||(42745068-42745124)
chr3 (174-238)||(47132019-47132083)
chr3 (179-235)||(54837018-54837074)
[»] chr6 (12 HSPs)
chr6 (177-236)||(34939541-34939600)
chr6 (177-229)||(3528831-3528883)
chr6 (181-236)||(3217173-3217228)
chr6 (177-236)||(9027606-9027665)
chr6 (177-234)||(27909623-27909680)
chr6 (162-229)||(34939760-34939824)
chr6 (177-209)||(1408277-1408309)
chr6 (177-225)||(6536975-6537023)
chr6 (177-229)||(7785734-7785786)
chr6 (176-236)||(7931709-7931769)
chr6 (177-229)||(9667975-9668027)
chr6 (177-229)||(32171495-32171547)
[»] chr2 (6 HSPs)
chr2 (179-238)||(39621981-39622040)
chr2 (177-236)||(43065433-43065492)
chr2 (177-238)||(28677640-28677701)
chr2 (179-235)||(14299615-14299671)
chr2 (181-238)||(44606091-44606148)
chr2 (177-229)||(34652026-34652078)
[»] chr7 (6 HSPs)
chr7 (179-229)||(47134747-47134797)
chr7 (178-235)||(39360052-39360109)
chr7 (177-236)||(46082064-46082123)
chr7 (177-229)||(12234879-12234931)
chr7 (179-235)||(39551532-39551588)
chr7 (180-236)||(44808189-44808245)
[»] chr4 (4 HSPs)
chr4 (180-238)||(2874605-2874663)
chr4 (177-238)||(1137740-1137801)
chr4 (161-212)||(5131257-5131305)
chr4 (177-237)||(46110231-46110291)
[»] scaffold0147 (1 HSPs)
scaffold0147 (177-236)||(12687-12746)
[»] chr8 (6 HSPs)
chr8 (177-236)||(6950350-6950409)
chr8 (177-223)||(11795120-11795166)
chr8 (174-228)||(13000415-13000469)
chr8 (182-236)||(30191124-30191178)
chr8 (177-234)||(25869251-25869308)
chr8 (178-235)||(41620275-41620332)
[»] scaffold0311 (1 HSPs)
scaffold0311 (182-236)||(10600-10654)
[»] chr5 (1 HSPs)
chr5 (188-238)||(38766526-38766576)


Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 19 - 238
Target Start/End: Original strand, 3109861 - 3110080
Alignment:
Q  19 cacaggataggttaagtgtgtgtcaaaagagactggaacgacttccagatttgagtgaaggtatatttacatgttgcatgtttcttataccatgtttgtt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3109861 cacaggataggttaagtgtgtgtcaaaagagactggaacgacttccagatttgagtgaaggtatatttacatgttgcatgtttcttataccatgtttgtt 3109960  T
Q  119 tggataagcaacttaataagagcttatagtaaagatgttctcaaagctatcctggtgcagagcttatggaaataagcggaaaacaagttatggatgtgtc 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3109961 tggataagcaacttaataagagcttatagtaaagatgttctcaaagctatcctggtgcagagcttatggaaataagcggaaaacaagttatggatgtgtc 3110060  T
Q  219 ataagttgtttgcataagtt 238  Q
    | ||||||||||||||||||    
T  3110061 acaagttgtttgcataagtt 3110080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 238
Target Start/End: Complemental strand, 4768866 - 4768810
Alignment:
Q  182 ttatggaaataagcggaaaacaagttatggatgtgtcataagttgtttgcataagtt 238  Q
    |||||||||||||| ||||||||||||||||  |||| |||| ||||| | ||||||    
T  4768866 ttatggaaataagctgaaaacaagttatggacatgtcgtaagctgttttcgtaagtt 4768810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 177 - 235
Target Start/End: Original strand, 43115084 - 43115142
Alignment:
Q  177 agagcttatggaaataagcggaaaacaagttatggatgtgtcataagttgtttgcataa 235  Q
    ||||||||||||||||||| ||||||||||||||||  ||||||||||||||| |||||    
T  43115084 agagcttatggaaataagctgaaaacaagttatggacatgtcataagttgtttccataa 43115142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 150 - 229
Target Start/End: Original strand, 43875468 - 43875545
Alignment:
Q  150 aagatgttctca-aagctatcctggtgcagagcttatggaaataagcggaaaacaagttatggatgtgtcataagttgttt 229  Q
    |||||||||||| ||||||||||||   ||| ||||||||||||| | |||||||| ||||||| || |||||||||||||    
T  43875468 aagatgttctcataagctatcctgg---agaacttatggaaataatcagaaaacaacttatggacgtatcataagttgttt 43875545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 177 - 229
Target Start/End: Original strand, 36200124 - 36200176
Alignment:
Q  177 agagcttatggaaataagcggaaaacaagttatggatgtgtcataagttgttt 229  Q
    |||||| |||||||||||| |||||||| |||||||  |||||||||||||||    
T  36200124 agagctcatggaaataagctgaaaacaacttatggacatgtcataagttgttt 36200176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 181 - 236
Target Start/End: Original strand, 37273166 - 37273221
Alignment:
Q  181 cttatggaaataagcggaaaacaagttatggatgtgtcataagttgtttgcataag 236  Q
    ||||||||||||||  |||||||| |||||||  ||||||||||||||| ||||||    
T  37273166 cttatggaaataagttgaaaacaacttatggacatgtcataagttgtttccataag 37273221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 238
Target Start/End: Original strand, 41724251 - 41724301
Alignment:
Q  188 aaataagcggaaaacaagttatggatgtgtcataagttgtttgcataagtt 238  Q
    |||||||| |||||||| |||||||  ||||||||||||||| ||||||||    
T  41724251 aaataagctgaaaacaacttatggacatgtcataagttgtttccataagtt 41724301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 235
Target Start/End: Complemental strand, 27016486 - 27016433
Alignment:
Q  182 ttatggaaataagcggaaaacaagttatggatgtgtcataagttgtttgcataa 235  Q
    |||||||||||||| ||||||||||||| ||| |||||| || ||||| |||||    
T  27016486 ttatggaaataagctgaaaacaagttatagatatgtcatgagctgtttccataa 27016433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 229
Target Start/End: Original strand, 31010430 - 31010482
Alignment:
Q  177 agagcttatggaaataagcggaaaacaagttatggatgtgtcataagttgttt 229  Q
    ||||||||||||| ||||| |||||||  |||||||  |||||||||||||||    
T  31010430 agagcttatggaattaagctgaaaacagcttatggacatgtcataagttgttt 31010482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 235
Target Start/End: Original strand, 42745068 - 42745124
Alignment:
Q  179 agcttatggaaataagcggaaaacaagttatggatgtgtcataagttgtttgcataa 235  Q
    ||||||||||||||||  |||||||| ||||| |  ||||||||||||||| |||||    
T  42745068 agcttatggaaataagatgaaaacaacttatgaacatgtcataagttgtttacataa 42745124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 238
Target Start/End: Original strand, 47132019 - 47132083
Alignment:
Q  174 tgcagagcttatggaaataagcggaaaacaagttatggatgtgtcataagttgtttgcataagtt 238  Q
    |||||| |||||  |||||||| |||||||  |||||||| || |||||||||||| ||||||||    
T  47132019 tgcagaacttataaaaataagctgaaaacagtttatggatatgacataagttgttttcataagtt 47132083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 235
Target Start/End: Complemental strand, 54837074 - 54837018
Alignment:
Q  179 agcttatggaaataagcggaaaacaagttatggatgtgtcataagttgtttgcataa 235  Q
    |||||||  ||||||||||||||||||||||| |  ||||||||| ||||| |||||    
T  54837074 agcttataaaaataagcggaaaacaagttatgaacatgtcataagctgttttcataa 54837018  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 177 - 236
Target Start/End: Original strand, 34939541 - 34939600
Alignment:
Q  177 agagcttatggaaataagcggaaaacaagttatggatgtgtcataagttgtttgcataag 236  Q
    |||| |||||||||||||| |||||||| ||| ||| |||||||||||||||| ||||||    
T  34939541 agaggttatggaaataagctgaaaacaacttacggacgtgtcataagttgtttccataag 34939600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 177 - 229
Target Start/End: Original strand, 3528831 - 3528883
Alignment:
Q  177 agagcttatggaaataagcggaaaacaagttatggatgtgtcataagttgttt 229  Q
    |||||||||| |||||||  ||||||||||||||||  |||||||||||||||    
T  3528831 agagcttatgaaaataagatgaaaacaagttatggacatgtcataagttgttt 3528883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 181 - 236
Target Start/End: Complemental strand, 3217228 - 3217173
Alignment:
Q  181 cttatggaaataagcggaaaacaagttatggatgtgtcataagttgtttgcataag 236  Q
    ||||||||||||||| |||||||| |||| || ||||||| |||||||| ||||||    
T  3217228 cttatggaaataagctgaaaacaacttatcgacgtgtcatcagttgttttcataag 3217173  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 177 - 236
Target Start/End: Original strand, 9027606 - 9027665
Alignment:
Q  177 agagcttatggaaataagcggaaaacaagttatggatgtgtcataagttgtttgcataag 236  Q
    |||||||||| |||||||| |||||||| |||||||  ||||||||||| ||| ||||||    
T  9027606 agagcttatgaaaataagctgaaaacaacttatggacatgtcataagttatttccataag 9027665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 177 - 234
Target Start/End: Complemental strand, 27909680 - 27909623
Alignment:
Q  177 agagcttatggaaataagcggaaaacaagttatggatgtgtcataagttgtttgcata 234  Q
    ||||||||||||||||||| |||||||| |||||||  |||||||  |||||| ||||    
T  27909680 agagcttatggaaataagctgaaaacaacttatggacatgtcatatattgtttccata 27909623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 229
Target Start/End: Original strand, 34939760 - 34939824
Alignment:
Q  162 aagctatcctggtgcagagcttatggaaataagcggaaaacaagttatggatgtgtcataagttgttt 229  Q
    ||||||||||||   |||| |||||||||||||| |||||||| |||||||  ||||||||| |||||    
T  34939760 aagctatcctgg---agagtttatggaaataagctgaaaacaatttatggacatgtcataagctgttt 34939824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 209
Target Start/End: Complemental strand, 1408309 - 1408277
Alignment:
Q  177 agagcttatggaaataagcggaaaacaagttat 209  Q
    ||||||||||||||||||| |||||||||||||    
T  1408309 agagcttatggaaataagctgaaaacaagttat 1408277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 225
Target Start/End: Original strand, 6536975 - 6537023
Alignment:
Q  177 agagcttatggaaataagcggaaaacaagttatggatgtgtcataagtt 225  Q
    ||||||||||||||||||| |||||||| ||||| |  |||||||||||    
T  6536975 agagcttatggaaataagctgaaaacaacttatgaacatgtcataagtt 6537023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 229
Target Start/End: Complemental strand, 7785786 - 7785734
Alignment:
Q  177 agagcttatggaaataagcggaaaacaagttatggatgtgtcataagttgttt 229  Q
    ||||||||||||||||||| |||||||| |||| ||  ||||||||| |||||    
T  7785786 agagcttatggaaataagctgaaaacaacttatagacatgtcataagctgttt 7785734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 236
Target Start/End: Complemental strand, 7931769 - 7931709
Alignment:
Q  176 cagagcttatggaaataagcggaaaacaagttatggatgtgtcataagttgtttgcataag 236  Q
    ||||||||| |||||||||| |||||||| ||| | |  ||||||||||||||| ||||||    
T  7931769 cagagcttacggaaataagctgaaaacaacttaagaacatgtcataagttgttttcataag 7931709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 229
Target Start/End: Complemental strand, 9668027 - 9667975
Alignment:
Q  177 agagcttatggaaataagcggaaaacaagttatggatgtgtcataagttgttt 229  Q
    ||||||||||||||||||  |||||||  |||||||  |||||||||||||||    
T  9668027 agagcttatggaaataagttgaaaacagcttatggacatgtcataagttgttt 9667975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 229
Target Start/End: Original strand, 32171495 - 32171547
Alignment:
Q  177 agagcttatggaaataagcggaaaacaagttatggatgtgtcataagttgttt 229  Q
    ||||||||||||||||||| |||||||  | ||||| || |||||||||||||    
T  32171495 agagcttatggaaataagctgaaaacagttcatggaggtatcataagttgttt 32171547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 179 - 238
Target Start/End: Original strand, 39621981 - 39622040
Alignment:
Q  179 agcttatggaaataagcggaaaacaagttatggatgtgtcataagttgtttgcataagtt 238  Q
    |||||| |||||||||| |||||||| ||||| || ||||||||||||||| ||||||||    
T  39621981 agcttaaggaaataagctgaaaacaatttatgaatttgtcataagttgttttcataagtt 39622040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 177 - 236
Target Start/End: Complemental strand, 43065492 - 43065433
Alignment:
Q  177 agagcttatggaaataagcggaaaacaagttatggatgtgtcataagttgtttgcataag 236  Q
    ||||||||| ||||||||| |||||||| |||||||  ||||||||||||||| ||||||    
T  43065492 agagcttattgaaataagctgaaaacaatttatggacatgtcataagttgttttcataag 43065433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 177 - 238
Target Start/End: Complemental strand, 28677701 - 28677640
Alignment:
Q  177 agagcttatggaaataagcggaaaacaagttatggatgtgtcataagttgtttgcataagtt 238  Q
    ||||||||||||||||||| |||||||| ||||| |  ||||||||| ||||| ||||||||    
T  28677701 agagcttatggaaataagccgaaaacaacttatgaaaatgtcataagctgttttcataagtt 28677640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 235
Target Start/End: Complemental strand, 14299671 - 14299615
Alignment:
Q  179 agcttatggaaataagcggaaaacaagttatggatgtgtcataagttgtttgcataa 235  Q
    ||||||| ||||||||| ||||||||  ||||||| ||||||||||||||| |||||    
T  14299671 agcttatagaaataagctgaaaacaatgtatggatatgtcataagttgtttccataa 14299615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 238
Target Start/End: Complemental strand, 44606148 - 44606091
Alignment:
Q  181 cttatggaaataagcggaaaacaagttatggatgtgtcataagttgtttgcataagtt 238  Q
    |||||| |||| ||| |||||||| |||||||  ||||||||||||||| ||||||||    
T  44606148 cttatgaaaatcagctgaaaacaacttatggacatgtcataagttgttttcataagtt 44606091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 229
Target Start/End: Complemental strand, 34652078 - 34652026
Alignment:
Q  177 agagcttatggaaataagcggaaaacaagttatggatgtgtcataagttgttt 229  Q
    ||||||||||||||||||  |||||||  |||||||  |||||||||||||||    
T  34652078 agagcttatggaaataagttgaaaacagcttatggacatgtcataagttgttt 34652026  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 179 - 229
Target Start/End: Complemental strand, 47134797 - 47134747
Alignment:
Q  179 agcttatggaaataagcggaaaacaagttatggatgtgtcataagttgttt 229  Q
    |||||||| |||||||| |||||||| ||||||| ||||||||||||||||    
T  47134797 agcttatgaaaataagctgaaaacaacttatggacgtgtcataagttgttt 47134747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 178 - 235
Target Start/End: Original strand, 39360052 - 39360109
Alignment:
Q  178 gagcttatggaaataagcggaaaacaagttatggatgtgtcataagttgtttgcataa 235  Q
    |||||||| ||||||||| |||| ||| |||||||| ||||||||||||||| |||||    
T  39360052 gagcttattgaaataagctgaaagcaacttatggatatgtcataagttgtttccataa 39360109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 177 - 236
Target Start/End: Original strand, 46082064 - 46082123
Alignment:
Q  177 agagcttatggaaataagcggaaaacaagttatggatgtgtcataagttgtttgcataag 236  Q
    |||||||||| |||||||| |||||||| ||||||   ||||||||||||||| ||||||    
T  46082064 agagcttatgaaaataagctgaaaacaacttatggtcatgtcataagttgttttcataag 46082123  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 229
Target Start/End: Complemental strand, 12234931 - 12234879
Alignment:
Q  177 agagcttatggaaataagcggaaaacaagttatggatgtgtcataagttgttt 229  Q
    ||||||||||||||||||| |||||||  |||| ||  |||||||||||||||    
T  12234931 agagcttatggaaataagctgaaaacagcttatagacatgtcataagttgttt 12234879  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 235
Target Start/End: Complemental strand, 39551588 - 39551532
Alignment:
Q  179 agcttatggaaataagcggaaaacaagttatggatgtgtcataagttgtttgcataa 235  Q
    ||||||||||||||||| || ||||  |||||||  ||||||||||||||| |||||    
T  39551588 agcttatggaaataagctgacaacaccttatggacatgtcataagttgtttccataa 39551532  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 236
Target Start/End: Original strand, 44808189 - 44808245
Alignment:
Q  180 gcttatggaaataagcggaaaacaagttatggatgtgtcataagttgtttgcataag 236  Q
    ||||||| |||||||| ||||||| ||||||||  ||||||||||| ||| ||||||    
T  44808189 gcttatgaaaataagctgaaaacaggttatggacatgtcataagttattttcataag 44808245  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 180 - 238
Target Start/End: Complemental strand, 2874663 - 2874605
Alignment:
Q  180 gcttatggaaataagcggaaaacaagttatggatgtgtcataagttgtttgcataagtt 238  Q
    |||||||||||||||||||||| |  |||||||  ||||||||||||||| ||||||||    
T  2874663 gcttatggaaataagcggaaaatagattatggacatgtcataagttgtttccataagtt 2874605  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 177 - 238
Target Start/End: Original strand, 1137740 - 1137801
Alignment:
Q  177 agagcttatggaaataagcggaaaacaagttatggatgtgtcataagttgtttgcataagtt 238  Q
    ||||||||||||||||| | |||||||| ||||| |  ||||||||| ||||| ||||||||    
T  1137740 agagcttatggaaataaactgaaaacaacttatgaacatgtcataagatgttttcataagtt 1137801  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 212
Target Start/End: Complemental strand, 5131305 - 5131257
Alignment:
Q  161 aaagctatcctggtgcagagcttatggaaataagcggaaaacaagttatgga 212  Q
    |||||||||||||   ||||||||||||||||||| |||||||| |||||||    
T  5131305 aaagctatcctgg---agagcttatggaaataagctgaaaacaacttatgga 5131257  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 237
Target Start/End: Original strand, 46110231 - 46110291
Alignment:
Q  177 agagcttatggaaataagcggaaaacaagttatggatgtgtcataagttgtttgcataagt 237  Q
    ||||||||| ||||||||| |||||||| |||||  | | ||||||||||||| |||||||    
T  46110231 agagcttatagaaataagctgaaaacaacttatgagtatatcataagttgttttcataagt 46110291  T

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Target: scaffold0147 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0147
Description:

Target: scaffold0147; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 177 - 236
Target Start/End: Complemental strand, 12746 - 12687
Alignment:
Q  177 agagcttatggaaataagcggaaaacaagttatggatgtgtcataagttgtttgcataag 236  Q
    ||||||||||||  ||||| |||||||| |||||||  ||||||||||||||| ||||||    
T  12746 agagcttatggagctaagctgaaaacaacttatggacatgtcataagttgtttccataag 12687  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 177 - 236
Target Start/End: Original strand, 6950350 - 6950409
Alignment:
Q  177 agagcttatggaaataagcggaaaacaagttatggatgtgtcataagttgtttgcataag 236  Q
    ||||||||||||||||||| |||||||| |||| ||  ||||||| ||||||| ||||||    
T  6950350 agagcttatggaaataagctgaaaacaacttatcgacatgtcataggttgtttacataag 6950409  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 223
Target Start/End: Original strand, 11795120 - 11795166
Alignment:
Q  177 agagcttatggaaataagcggaaaacaagttatggatgtgtcataag 223  Q
    ||||||||||||||||||| ||||||| ||||||||  |||||||||    
T  11795120 agagcttatggaaataagctgaaaacaggttatggacatgtcataag 11795166  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 228
Target Start/End: Complemental strand, 13000469 - 13000415
Alignment:
Q  174 tgcagagcttatggaaataagcggaaaacaagttatggatgtgtcataagttgtt 228  Q
    |||| ||||||||||||||||| |||||||| || ||||  ||||||||||||||    
T  13000469 tgcaaagcttatggaaataagctgaaaacaacttgtggacatgtcataagttgtt 13000415  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 236
Target Start/End: Complemental strand, 30191178 - 30191124
Alignment:
Q  182 ttatggaaataagcggaaaacaagttatggatgtgtcataagttgtttgcataag 236  Q
    |||||||||||||| ||||||||||| || |  ||||||||||||||| ||||||    
T  30191178 ttatggaaataagctgaaaacaagttttgaacatgtcataagttgtttccataag 30191124  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 177 - 234
Target Start/End: Complemental strand, 25869308 - 25869251
Alignment:
Q  177 agagcttatggaaataagcggaaaacaagttatggatgtgtcataagttgtttgcata 234  Q
    |||| |||||||||||||| |||||||| |||||||  ||||||||||| ||| ||||    
T  25869308 agagtttatggaaataagctgaaaacaacttatggacatgtcataagttatttccata 25869251  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 178 - 235
Target Start/End: Complemental strand, 41620332 - 41620275
Alignment:
Q  178 gagcttatggaaataagcggaaaacaagttatggatgtgtcataagttgtttgcataa 235  Q
    |||||| || ||||||||||||||||| |||||||  |||||||| |||||| |||||    
T  41620332 gagcttttgaaaataagcggaaaacaacttatggacatgtcataatttgtttccataa 41620275  T

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Target: scaffold0311 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 236
Target Start/End: Complemental strand, 10654 - 10600
Alignment:
Q  182 ttatggaaataagcggaaaacaagttatggatgtgtcataagttgtttgcataag 236  Q
    |||||||||||||| |||||||| |||||||  |||||| |||||||| ||||||    
T  10654 ttatggaaataagctgaaaacaacttatggacatgtcattagttgtttacataag 10600  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 238
Target Start/End: Complemental strand, 38766576 - 38766526
Alignment:
Q  188 aaataagcggaaaacaagttatggatgtgtcataagttgtttgcataagtt 238  Q
    |||||||  |||||||| ||||||| |||||||||||||||| ||||||||    
T  38766576 aaataagtcgaaaacaacttatggacgtgtcataagttgtttccataagtt 38766526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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