View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1485_low_29 (Length: 236)
Name: NF1485_low_29
Description: NF1485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1485_low_29 |
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Alignment Details
Target: chr7 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 39936922 - 39936701
Alignment:
| Q |
1 |
aacatcataggtaccatgccacatcccatggacatcatctgcataagttgtactctctgtttcagaaatgaaactacatgaccaacttgctactagatag |
100 |
Q |
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| T |
39936922 |
aacatcataggtaccatgccacatcccatggacatcatctgcataagttgtactctctgtttcagaaatgaaactacatgaccaacttgctactagatag |
39936823 |
T |
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| Q |
101 |
tggcatgaccttttgttaaggtcacaaatatatagatgtcatttctaatcaactgaattgcttgtgtaatgttccaccactggctgatggtggcatggtg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
39936822 |
tggcatgaccttttgttaaggtcacaaatatatagatgtcatttctaatcaactgaattgcttgtgtaatgttccaccactggccgatggtggcatggtg |
39936723 |
T |
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| Q |
201 |
caagcttactagggtatcttgt |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
39936722 |
caagcttactagggtatcttgt |
39936701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 29730106 - 29730151
Alignment:
| Q |
1 |
aacatcataggtaccatgccacatcccatggacatcatctgcataa |
46 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29730106 |
aacatcataggtaccatgccacatcccatggacatcatctgcataa |
29730151 |
T |
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