View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1485_low_3 (Length: 457)
Name: NF1485_low_3
Description: NF1485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1485_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 400; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 16 - 442
Target Start/End: Complemental strand, 52489563 - 52489139
Alignment:
| Q |
16 |
tatactatggttttttctctataggattttgatttcaaggagttgcaagaagtccagaaatattatccacatggttatcatggtgtggataaggagggaa |
115 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52489563 |
tatactatggttttttctcta--ggattttgatttcaaggagttacaagaagtccagaaatattatccacatggttatcatggtgtggataaggagggaa |
52489466 |
T |
|
| Q |
116 |
gacctgtttatattgagaggctaggaaaagttgatcccaataggcttatgcaagtaactaccatggaaagatatttgagataccatgtgcagggttttga |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52489465 |
gacctgtttatattgagaggctaggaaaagttgatcccaataggcttatgcaagtaactaccatggaaagatatttgagataccatgtgcagggttttga |
52489366 |
T |
|
| Q |
216 |
gaaaacattttctgtcaagtttccagcttgctctatagctgctaagagacacataggttccagtacaacaattttggatgttcaaggcgtggtacgtgtt |
315 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52489365 |
gaaaacattttctgtcaaatttccagcttgctctatagctgctaagagacgcataggttccagtacaacaattttggatgttcaaggcgtggtacgtgtt |
52489266 |
T |
|
| Q |
316 |
ctgtctaaatgcatgtttagattgacattgagtatggcttaattgaagctctaaagtagcacactgtaattccgccaaattcaccgttaatccaaacatg |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52489265 |
ctgtctaaatgcatgtttagattgacattgagtatggcttaattgaagctctaaagtagcacactgtaattccgccaaattcaccgttaatccaaacatg |
52489166 |
T |
|
| Q |
416 |
cactaaatggctattgatagttatttg |
442 |
Q |
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| T |
52489165 |
cactaaatggctattgaaagttatttg |
52489139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 38 - 309
Target Start/End: Complemental strand, 54781104 - 54780833
Alignment:
| Q |
38 |
aggattttgatttcaaggagttgcaagaagtccagaaatattatccacatggttatcatggtgtggataaggagggaagacctgtttatattgagaggct |
137 |
Q |
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|||||||||| ||||||||||| | ||||| ||| |||||||||||||| |||||||||| |||||||| ||||| |||||||||||||| || || |
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| T |
54781104 |
aggattttgagttcaaggagttaaatgaagttgtgaagtattatccacatggccatcatggtgtagataaggaaggaaggcctgtttatattgaaagact |
54781005 |
T |
|
| Q |
138 |
aggaaaagttgatcccaataggcttatgcaagtaactaccatggaaagatatttgagataccatgtgcagggttttgagaaaacattttctgtcaagttt |
237 |
Q |
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|||||||||||||| || | || ||||| || || || ||||| |||||| | | ||||||||||| | ||||||||| | ||| | | |||||| |
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| T |
54781004 |
tggaaaagttgatccgaacaaactgatgcaggttacaactatggatagatatgtaaagtaccatgtgcaagagtttgagaaatcttttgcaataaagttt |
54780905 |
T |
|
| Q |
238 |
ccagcttgctctatagctgctaagagacacataggttccagtacaacaattttggatgttcaaggcgtggta |
309 |
Q |
| |
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|| |||||| |||| ||||| ||||| ||||||| ||| || || ||||| || ||||||||||| |||||| |
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| T |
54780904 |
cctgcttgcactattgctgcaaagaggcacatagattcaagcaccacaatcttagatgttcaaggagtggta |
54780833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 155; Significance: 4e-82; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 37 - 323
Target Start/End: Complemental strand, 7210010 - 7209724
Alignment:
| Q |
37 |
taggattttgatttcaaggagttgcaagaagtccagaaatattatccacatggttatcatggtgtggataaggagggaagacctgtttatattgagaggc |
136 |
Q |
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||||||||||| |||| |||||| | ||||||| |||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||| |
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| T |
7210010 |
taggattttgagttcagtgagttggacgaagtcctacaatattatccacatggttatcatggtgttgataaagaaggaagacctgtttatattgagaggc |
7209911 |
T |
|
| Q |
137 |
taggaaaagttgatcccaataggcttatgcaagtaactaccatggaaagatatttgagataccatgtgcagggttttgagaaaacattttctgtcaagtt |
236 |
Q |
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|||| |||||||||||||||| ||||||||||||||||||||||||||| ||||| | ||||||||| ||||||||||||||||| ||| |||| ||||| |
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| T |
7209910 |
taggtaaagttgatcccaataagcttatgcaagtaactaccatggaaaggtatttaaaataccatgtacagggttttgagaaaacgtttgctgttaagtt |
7209811 |
T |
|
| Q |
237 |
tccagcttgctctatagctgctaagagacacataggttccagtacaacaattttggatgttcaaggcgtggtacgtgttctgtctaa |
323 |
Q |
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||| ||||| ||||| ||||| |||||||| |||| ||| |||||||| |||||||||||||| || |||||| || | |||||||| |
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| T |
7209810 |
tcctgcttgttctattgctgcaaagagacatatagattcaagtacaaccattttggatgttcatggtgtggtaagtttactgtctaa |
7209724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 66; Significance: 5e-29; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 76 - 309
Target Start/End: Complemental strand, 26671498 - 26671265
Alignment:
| Q |
76 |
tattatccacatggttatcatggtgtggataaggagggaagacctgtttatattgagaggctaggaaaagttgatcccaataggcttatgcaagtaacta |
175 |
Q |
| |
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|||||||||||||| |||||||||| |||||||||||||| |||||||| ||||| || || |||||||| ||||| || | ||||||||||| || | |
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| T |
26671498 |
tattatccacatgggcatcatggtgttgataaggagggaaggcctgtttacattgaaagacttggaaaagtggatccaaacaaacttatgcaagttacaa |
26671399 |
T |
|
| Q |
176 |
ccatggaaagatatttgagataccatgtgcagggttttgagaaaacattttctgtcaagtttccagcttgctctatagctgctaagagacacataggttc |
275 |
Q |
| |
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| ||||| |||||| ||| |||||||| | | ||||||||| | ||| | | |||||||| |||||| | || ||| | ||||| ||||||| ||| |
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| T |
26671398 |
ctatggatagatatgtgaagtaccatgtacgcgagtttgagaaatcttttgcgattaagtttcctgcttgcacaattgcttccaagaggcacatagattc |
26671299 |
T |
|
| Q |
276 |
cagtacaacaattttggatgttcaaggcgtggta |
309 |
Q |
| |
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|||||| ||||| || |||||||||||||||||| |
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| T |
26671298 |
cagtaccacaatcttagatgttcaaggcgtggta |
26671265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 80 - 124
Target Start/End: Complemental strand, 26664460 - 26664416
Alignment:
| Q |
80 |
atccacatggttatcatggtgtggataaggagggaagacctgttt |
124 |
Q |
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|||||||||| ||||||||||| |||||||||||||||||||||| |
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| T |
26664460 |
atccacatggctatcatggtgttgataaggagggaagacctgttt |
26664416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 375 - 419
Target Start/End: Complemental strand, 30506271 - 30506227
Alignment:
| Q |
375 |
cacactgtaattccgccaaattcaccgttaatccaaacatgcact |
419 |
Q |
| |
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|||||| | |||| |||||| |||||||||||||||||||||||| |
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| T |
30506271 |
cacactatgattctgccaaactcaccgttaatccaaacatgcact |
30506227 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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