View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1485_low_4 (Length: 420)
Name: NF1485_low_4
Description: NF1485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1485_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 10 - 404
Target Start/End: Original strand, 24256596 - 24256990
Alignment:
| Q |
10 |
attattcttgggcctaaaaatacttgctccactaaactcctagcccatttattcataggaaacccggcctcaaacgaatcatacatggcagaataacgat |
109 |
Q |
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| T |
24256596 |
attattcttgggcctaaaaatacttgctccactaaactcctagcccatttattcataggaaacccagcctcgaacgagtcatacatggcagaataacgat |
24256695 |
T |
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| Q |
110 |
gtaatgaatccatgaacaaacccacaaagcctgcatcagtgatgggccctacttcctcctcgactaatgtcacgagctttgttcctagctccctggcacc |
209 |
Q |
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| T |
24256696 |
gtaatgaatccatgaacaaacccacaaagcctgcatcagtgatgggccctacttcctcctcgactaatgtcacgagctttgttcctaactccttggcacc |
24256795 |
T |
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| Q |
210 |
gttcaagaaggaagcaatagaatctgaagcccggtaactaagatgaggcaaatgcatgacacagttaaacaccaaagcctcaccacgaacaagctttaat |
309 |
Q |
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| T |
24256796 |
gttcaagaaggaagcaatagaatctgaagcccggtaactaagatgaggcaaatgcatgacacagttaaacaccaaagcctcaccacgaacaagctttaat |
24256895 |
T |
|
| Q |
310 |
gaagaggttcgaaacgtttcgtctgattccaacctacattgatgaaaagtgaacggttgtccaacggaagcagcaaaggttgttaaccttcttcc |
404 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24256896 |
gaagaggttcgaaacctttcgtctgattccaacctacattgatgaaaagtgaacggttgtccaacggaagcagcaaaggttgttaaccttcttcc |
24256990 |
T |
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