View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1485_low_7 (Length: 397)
Name: NF1485_low_7
Description: NF1485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1485_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 352; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 9 - 383
Target Start/End: Complemental strand, 14645244 - 14644872
Alignment:
| Q |
9 |
gattatactgtttattagcttagtagtgattgttttcactgcaagctttagatttgctgatatgattatgaagatgtaaattttattagcaaacttagtt |
108 |
Q |
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| T |
14645244 |
gattatactgtttattagcttagtagtgattgttttcactgcaagctttagatttgctgatatgattatgaagatgtaatttttattagcaaacttagtt |
14645145 |
T |
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| Q |
109 |
tacatgatatttatatacactctatgtactttacttgctatgcaagtatacaaccaaagactaactaatgagatgctttgaggcgtgtacactatggtgt |
208 |
Q |
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| T |
14645144 |
tacatgatatttatatacactctatgtactttacttgctatgcaagtatacaaccaatgactaactaatgagatgctttgaggcgtgtacactatggtgt |
14645045 |
T |
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| Q |
209 |
ttctatattggtttgataatattgataactaaaattatattaagaggatgattatgctattgttaaagacaccatgaaatttacattttagaaaaacttc |
308 |
Q |
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| T |
14645044 |
ttctatattggtttgataatattgataactaaaattatattaagaggatgattatgctattgttaaagacaccatgaaatttacattttagaaaaacttc |
14644945 |
T |
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| Q |
309 |
ataactggtttttgttatctgagaagtaggtatacatagtcttgcttaaacacagaatggattgatggttgttta |
383 |
Q |
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| T |
14644944 |
ataactggtttttgttatctgagaagtaggtatacatagtcttgcttaaacac--aatggcttgatggttgttta |
14644872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 100 - 132
Target Start/End: Complemental strand, 14664671 - 14664639
Alignment:
| Q |
100 |
aacttagtttacatgatatttatatacactcta |
132 |
Q |
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| T |
14664671 |
aactgagtttacatgatatttatatacactcta |
14664639 |
T |
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