View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14860_low_4 (Length: 254)
Name: NF14860_low_4
Description: NF14860
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14860_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 2 - 113
Target Start/End: Original strand, 29406009 - 29406120
Alignment:
| Q |
2 |
tcacatgcaatgttgtcgatgctggaaggtcggggttttccttggagatggtggcgagtaacgcaacacgtcagtgtacttggtgacaagaaaaaattgg |
101 |
Q |
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| T |
29406009 |
tcacatgcaacattgttggtgctagaaggtcggagttttccttggagatggtggcgagtaatgcaacatgccagtgtaccttgtaacaagaaaaaattgg |
29406108 |
T |
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| Q |
102 |
ctttgctctcta |
113 |
Q |
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| T |
29406109 |
ctctgctctcta |
29406120 |
T |
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Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 21 - 87
Target Start/End: Original strand, 23776842 - 23776908
Alignment:
| Q |
21 |
tgctggaaggtcggggttttccttggagatggtggcgagtaacgcaacacgtcagtgtacttggtga |
87 |
Q |
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| T |
23776842 |
tgctggaaggtcggggttttccttggagatggtggcgagtaatgcaacacgccagtgtactttgtga |
23776908 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 3 - 97
Target Start/End: Complemental strand, 22038195 - 22038101
Alignment:
| Q |
3 |
cacatgcaatgttgtcgatgctggaaggtcggggttttccttggagatggtggcgagtaacgcaacacgtcagtgtacttggtgacaagaaaaaa |
97 |
Q |
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| T |
22038195 |
cacatgcaacgttgtcggtgctggaaggtcggggttctccttgaagatggtggtgagtaatgcaacatgccagtgtacttggcaacgagaaaaaa |
22038101 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 3 - 97
Target Start/End: Complemental strand, 22047529 - 22047435
Alignment:
| Q |
3 |
cacatgcaatgttgtcgatgctggaaggtcggggttttccttggagatggtggcgagtaacgcaacacgtcagtgtacttggtgacaagaaaaaa |
97 |
Q |
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| T |
22047529 |
cacatgcaacgttgtcggtgctggaaggtcggggttctccttgaagatggtggtgagtaatgcaacatgccagtgtacttggcaacgagaaaaaa |
22047435 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 178 - 234
Target Start/End: Complemental strand, 22047353 - 22047297
Alignment:
| Q |
178 |
catggtaacaaatgtatcattattgatttcttggcttatcaatgaatatatgttagg |
234 |
Q |
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| T |
22047353 |
catggtaacaaatgtatcattattgatttcttggcttttcaatgaatatatggtagg |
22047297 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 178 - 229
Target Start/End: Complemental strand, 22038019 - 22037968
Alignment:
| Q |
178 |
catggtaacaaatgtatcattattgatttcttggcttatcaatgaatatatg |
229 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
22038019 |
catggtaacaaatgtatcattattgatttcttggcttttcaatgaatatatg |
22037968 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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